Variant report

Variant	rs56302101
Chromosome Location	chr17:46390506-46390507
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46390188..46393069-chr17:46694762..46697606,2	K562	blood:
2	chr17:46389712..46391460-chr17:46606322..46609188,2	K562	blood:
3	chr17:46387897..46390593-chr17:46393041..46395162,2	K562	blood:

Variant related genes	Relation type
ENSG00000120094	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10514944	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16955960	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16956001	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17620866	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17621689	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17623125	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17623416	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17623518	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17693878	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17694092	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17694168	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17694404	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17694670	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17695179	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2036520	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2036521	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2175156	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4491576	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55641965	0.92[ASN][1000 genomes]
rs55912545	0.92[ASN][1000 genomes]
rs56093336	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56151068	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72825596	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72827805	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72827806	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72827810	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72827825	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72827848	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72827851	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72827854	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46373200-46415000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46375800-46396400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr17:46375800-46415800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:46377200-46421000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr17:46380200-46395400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr17:46385400-46393400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr17:46386200-46407800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr17:46387600-46390600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr17:46388600-46391400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr17:46388800-46390800	Enhancers	Fetal Kidney	kidney
11	chr17:46389000-46392000	Weak transcription	Fetal Intestine Small	intestine
12	chr17:46389200-46393200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr17:46389200-46393600	Weak transcription	Primary T cells from cord blood	blood
14	chr17:46389400-46392000	Enhancers	A549	lung
15	chr17:46389800-46391000	Enhancers	Primary B cells from peripheral blood	blood
16	chr17:46390000-46390800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr17:46390000-46390800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr17:46390200-46390600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr17:46390200-46391000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr17:46390200-46391200	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr17:46390200-46429400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr17:46390400-46390600	Enhancers	GM12878-XiMat	blood

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