Variant report

Variant	rs72827854
Chromosome Location	chr17:46460525-46460526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CUX1	chr17:46460358-46460733	K562	blood:	n/a	n/a
2	SPI1	chr17:46460411-46460776	HL-60	blood:	n/a	chr17:46460577-46460590 chr17:46460578-46460591 chr17:46460577-46460590

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46459433..46462163-chr17:46658202..46660838,2	K562	blood:

Variant related genes	Relation type
ENSG00000266222	TF binding region
ENSG00000200538	TF binding region
ENSG00000120093	Chromatin interaction
ENSG00000257178	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10514944	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16955960	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956001	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16957085	0.89[AFR][1000 genomes]
rs17620866	0.84[ASN][1000 genomes]
rs17621689	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17623125	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17623416	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17623518	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17693878	0.83[ASN][1000 genomes]
rs17694092	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17694168	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17694404	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17694670	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17695179	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2036520	0.85[ASN][1000 genomes]
rs2036521	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2175156	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3809744	0.89[AFR][1000 genomes]
rs4491576	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55641965	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs55751709	0.89[AFR][1000 genomes]
rs55765969	0.89[AFR][1000 genomes]
rs55912545	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs56093336	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56151068	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56302101	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56311919	0.89[AFR][1000 genomes]
rs56371910	0.89[AFR][1000 genomes]
rs72825596	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72827805	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72827806	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72827810	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72827825	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72827848	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827851	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46438400-46471800	Weak transcription	Thymus	Thymus
2	chr17:46450800-46462000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr17:46452200-46463800	Weak transcription	Primary B cells from cord blood	blood
4	chr17:46452400-46463200	Strong transcription	Primary T cells from cord blood	blood
5	chr17:46454400-46460600	Weak transcription	K562	blood
6	chr17:46454600-46461800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:46456400-46461600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr17:46456600-46462800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr17:46457400-46460600	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr17:46457400-46461800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr17:46457600-46463200	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr17:46457600-46464800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr17:46459800-46460600	Enhancers	Primary B cells from peripheral blood	blood
14	chr17:46459800-46460600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr17:46459800-46461200	Strong transcription	Fetal Thymus	thymus
16	chr17:46459800-46462000	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr17:46460000-46460600	Bivalent Enhancer	Fetal Lung	lung
18	chr17:46460200-46460600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr17:46460200-46460800	Enhancers	GM12878-XiMat	blood
20	chr17:46460400-46460800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr17:46460400-46462000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr17:46460400-46462000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr17:46460400-46463200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr17:46460400-46463800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr17:46460400-46466400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr17:46460400-46471200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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