Variant report

Variant	rs72827825
Chromosome Location	chr17:46392352-46392353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46391077..46394144-chr17:46396348..46399085,4	K562	blood:
2	chr17:46390188..46393069-chr17:46694762..46697606,2	K562	blood:
3	chr17:46383237..46384888-chr17:46391109..46393024,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235300	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10514944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16955960	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16956001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16956501	0.82[AMR][1000 genomes]
rs16957085	0.89[AFR][1000 genomes]
rs17620866	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17621689	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17623125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17623416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17623518	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17693878	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17694092	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17694168	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17694404	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17694670	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17695179	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2036520	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2036521	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2175156	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2271264	0.82[AMR][1000 genomes]
rs2924251	0.80[ASN][1000 genomes]
rs2938475	0.80[ASN][1000 genomes]
rs3809744	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4491576	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55641965	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55751709	0.89[AFR][1000 genomes]
rs55765969	0.89[AFR][1000 genomes]
rs55912545	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56093336	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56151068	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56302101	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56311919	0.89[AFR][1000 genomes]
rs56371910	0.89[AFR][1000 genomes]
rs72825596	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72827805	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72827806	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72827810	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72827848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72827851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72827854	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72827869	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv575466	chr17:46391078-46402212	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46373200-46415000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46375800-46396400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr17:46375800-46415800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:46377200-46421000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr17:46380200-46395400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr17:46385400-46393400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr17:46386200-46407800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr17:46389200-46393200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:46389200-46393600	Weak transcription	Primary T cells from cord blood	blood
10	chr17:46390200-46429400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr17:46391000-46396000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr17:46391000-46410400	Weak transcription	GM12878-XiMat	blood
13	chr17:46391000-46420200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr17:46391200-46393800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr17:46391200-46421200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr17:46391400-46405800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr17:46392200-46392400	Enhancers	Fetal Kidney	kidney
18	chr17:46392200-46399600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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