Variant report

Variant	rs16956501
Chromosome Location	chr17:46497274-46497275
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46494670..46497278-chr17:46498720..46500696,2	K562	blood:
2	chr17:46497195..46500103-chr17:46505691..46509379,3	MCF-7	breast:
3	chr17:46491251..46493630-chr17:46497072..46499338,2	K562	blood:

Variant related genes	Relation type
ENSG00000141293	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10514944	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs1396869	0.88[ASN][1000 genomes]
rs16955960	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16956001	0.82[AMR][1000 genomes]
rs16957085	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16957299	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs17620866	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs17621689	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17623125	0.82[AMR][1000 genomes]
rs17623416	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes]
rs17623518	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17694092	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs17694404	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap]
rs17694670	1.00[AFR][1000 genomes]
rs17695179	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2175156	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2271264	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2924251	0.84[JPT][hapmap]
rs34463696	0.83[ASN][1000 genomes]
rs3809744	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55641965	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55751709	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55765969	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55912545	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56093336	0.82[AMR][1000 genomes]
rs56103412	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56151068	0.82[AMR][1000 genomes]
rs56311919	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56371910	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72827806	0.90[AFR][1000 genomes]
rs72827810	1.00[AFR][1000 genomes]
rs72827825	0.82[AMR][1000 genomes]
rs72827848	0.82[AMR][1000 genomes]
rs72827851	0.82[AMR][1000 genomes]
rs72827869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827873	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72827897	0.88[ASN][1000 genomes]
rs9899997	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9907565	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9913716	0.81[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46486800-46503000	Weak transcription	Thymus	Thymus
2	chr17:46487600-46501800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:46487800-46503600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr17:46488800-46498800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr17:46488800-46499200	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr17:46489000-46501800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr17:46489200-46498200	Enhancers	Primary T cells from cord blood	blood
8	chr17:46489200-46502200	Weak transcription	Fetal Thymus	thymus
9	chr17:46489800-46505000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr17:46491400-46498000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr17:46492000-46503000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr17:46493200-46498000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr17:46493400-46497800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr17:46494600-46497400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr17:46494600-46497800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr17:46494600-46498000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr17:46494600-46498000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr17:46494600-46503600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr17:46494800-46497600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr17:46494800-46497800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr17:46494800-46497800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr17:46494800-46498000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr17:46494800-46498000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr17:46494800-46498000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr17:46494800-46498000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr17:46494800-46502600	Weak transcription	GM12878-XiMat	blood
27	chr17:46495200-46498000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr17:46496000-46497400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
29	chr17:46497000-46498000	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr17:46497000-46498000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr17:46497200-46497600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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