Variant report

Variant	rs17695179
Chromosome Location	chr17:46370309-46370310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46369329..46371278-chr17:46687480..46689672,2	K562	blood:
2	chr17:46369748..46372515-chr17:46702166..46704377,2	K562	blood:
3	chr17:46361077..46363671-chr17:46367230..46370721,3	K562	blood:

Variant related genes	Relation type
ENSG00000170689	Chromatin interaction
ENSG00000260027	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10514944	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12939334	0.80[EUR][1000 genomes]
rs12946208	0.80[EUR][1000 genomes]
rs16954268	0.80[EUR][1000 genomes]
rs16954324	0.80[EUR][1000 genomes]
rs16955960	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16956001	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16956501	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17620866	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17621689	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623125	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17623416	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17623518	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17693878	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17694092	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17694168	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17694404	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17694670	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1979897	0.80[EUR][1000 genomes]
rs2036520	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2036521	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2175156	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2271264	0.82[AMR][1000 genomes]
rs2924251	0.84[ASN][1000 genomes]
rs2938475	0.84[ASN][1000 genomes]
rs3809744	0.82[AMR][1000 genomes]
rs3897789	0.80[EUR][1000 genomes]
rs4491576	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55641965	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55912545	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56093336	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56151068	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56302101	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67345313	0.80[EUR][1000 genomes]
rs72825596	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72827805	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72827806	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72827810	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72827825	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72827848	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72827851	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72827854	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72827869	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:46343400-46371200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:46356600-46370800	Weak transcription	GM12878-XiMat	blood
6	chr17:46357000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:46357000-46371200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr17:46357400-46371200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr17:46357600-46371400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr17:46358200-46371000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr17:46361400-46371000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr17:46361600-46371000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr17:46361600-46371800	Weak transcription	Primary T cells from cord blood	blood
14	chr17:46362200-46371000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr17:46363200-46370800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr17:46368000-46371600	Weak transcription	HUVEC	blood vessel
17	chr17:46368200-46371000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr17:46370000-46371000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr17:46370200-46370600	Weak transcription	Fetal Intestine Small	intestine
20	chr17:46370200-46370600	Weak transcription	A549	lung

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