Variant report

Variant	rs208005
Chromosome Location	chr17:46239985-46239986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 169 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs1002330	0.84[ASN][1000 genomes]
rs1010228	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs1010230	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10445339	0.83[ASN][1000 genomes]
rs10445377	0.84[ASN][1000 genomes]
rs10514944	0.89[TSI][hapmap]
rs10853097	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10853098	0.84[ASN][1000 genomes]
rs11079806	1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap]
rs11079808	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs11079809	0.93[ASN][1000 genomes]
rs11079814	0.82[ASN][1000 genomes]
rs11651097	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs11872095	0.82[ASN][1000 genomes]
rs12150533	0.80[ASN][1000 genomes]
rs12452956	0.82[ASN][1000 genomes]
rs12600980	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12936369	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12936731	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs12939334	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12939514	0.81[ASN][1000 genomes]
rs12941295	0.86[ASN][1000 genomes]
rs12941830	0.84[ASN][1000 genomes]
rs12943543	0.86[ASN][1000 genomes]
rs12946143	0.83[AFR][1000 genomes]
rs12946208	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12947089	0.85[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs12948214	0.91[YRI][hapmap]
rs12950213	0.82[ASN][1000 genomes]
rs12950402	0.86[ASN][1000 genomes]
rs1316657	0.85[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs1452662	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1452663	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1452665	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1452666	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1452667	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1468270	1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap]
rs16951519	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16952687	0.91[YRI][hapmap]
rs16953927	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16953941	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16954268	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16954324	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17620033	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs17623518	0.84[TSI][hapmap]
rs17681336	0.84[ASN][1000 genomes]
rs17694092	0.95[TSI][hapmap]
rs17694404	0.95[TSI][hapmap]
rs182305	0.82[EUR][1000 genomes]
rs1860862	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs1860866	0.93[ASN][1000 genomes]
rs1979897	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2021752	0.85[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs2021811	0.83[ASN][1000 genomes]
rs2023885	0.91[CEU][hapmap];0.91[YRI][hapmap]
rs2041572	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs2051821	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs2060876	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs208008	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs208009	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs208011	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs208012	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs208015	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.94[ASN][1000 genomes]
rs208019	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2109982	0.85[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs2109983	0.80[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2109984	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs2123341	0.85[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs2229369	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2240119	0.83[CEU][hapmap];0.94[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs2240120	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes]
rs2240121	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs2240122	1.00[CHB][hapmap];0.86[CHD][hapmap];0.93[JPT][hapmap]
rs2278868	0.85[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs2285860	0.83[CEU][hapmap];0.94[GIH][hapmap]
rs2305433	0.85[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs2325783	0.82[AFR][1000 genomes]
rs2325784	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2325804	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2325885	0.95[ASN][1000 genomes]
rs34949267	0.84[ASN][1000 genomes]
rs34980108	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35688835	0.86[ASN][1000 genomes]
rs36071506	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3744346	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs3744347	0.81[ASN][1000 genomes]
rs3785737	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3792692	0.85[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs3792694	0.85[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs3805363	0.81[ASN][1000 genomes]
rs3805370	0.84[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs3805371	0.82[ASN][1000 genomes]
rs3815472	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3897789	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3897986	0.85[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs4793779	0.83[CHB][hapmap]
rs4794441	0.86[ASN][1000 genomes]
rs4794447	0.83[CHB][hapmap]
rs4794448	0.86[ASN][1000 genomes]
rs4794449	0.86[ASN][1000 genomes]
rs4794450	0.81[ASN][1000 genomes]
rs4794451	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs4794453	0.86[ASN][1000 genomes]
rs4794505	0.80[ASN][1000 genomes]
rs4794517	0.80[ASN][1000 genomes]
rs4995899	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs55696440	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55920502	0.81[EUR][1000 genomes]
rs55982346	0.80[ASN][1000 genomes]
rs62064953	0.85[ASN][1000 genomes]
rs62066447	0.80[ASN][1000 genomes]
rs6504025	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs6504031	0.86[ASN][1000 genomes]
rs6504032	0.84[ASN][1000 genomes]
rs6504108	0.85[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs67345313	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6847	0.92[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs71356520	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71356521	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7209585	0.85[ASN][1000 genomes]
rs7209730	0.93[ASN][1000 genomes]
rs7210149	0.80[ASN][1000 genomes]
rs7212202	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7213339	0.81[ASN][1000 genomes]
rs7213876	0.82[ASN][1000 genomes]
rs7217496	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs7218700	0.89[ASN][1000 genomes]
rs7219967	0.80[ASN][1000 genomes]
rs7220520	0.95[CHD][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs7220768	0.85[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs7220922	0.84[ASN][1000 genomes]
rs7221441	0.81[ASN][1000 genomes]
rs7222136	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs7223867	0.85[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs7224014	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7224461	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7225550	0.85[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs7225865	0.82[ASN][1000 genomes]
rs741058	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7501770	0.81[ASN][1000 genomes]
rs757353	0.83[CEU][hapmap];0.94[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs758999	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs8065670	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs8065993	0.86[ASN][1000 genomes]
rs8066049	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8066391	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs8069064	0.80[ASN][1000 genomes]
rs8069263	0.85[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs8071199	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8071879	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs8072282	0.85[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs8075270	0.82[ASN][1000 genomes]
rs8075500	0.84[ASN][1000 genomes]
rs8076380	0.86[ASN][1000 genomes]
rs8077860	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs8079616	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8080662	0.86[ASN][1000 genomes]
rs875065	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs882380	0.80[ASN][1000 genomes]
rs978263	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9807087	0.93[ASN][1000 genomes]
rs9889470	0.87[ASN][1000 genomes]
rs9890691	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9899275	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9899461	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs9903692	0.98[ASN][1000 genomes]
rs9909933	0.95[ASN][1000 genomes]
rs9910516	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908576	chr17:46147807-46260366	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs208005	DHX58	cis	parietal	SCAN
rs208005	CBX1	Cis_1M	lymphoblastoid	RTeQTL
rs208005	CDK5RAP3	cis	cerebellum	SCAN
rs208005	CDK5RAP3	cis	parietal	SCAN
rs208005	TUBG1	cis	parietal	SCAN
rs208005	CBX1	cis	cerebellum	SCAN
rs208005	HSPB9	cis	parietal	SCAN
rs208005	HOXB7	cis	cerebellum	SCAN

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46216400-46251400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr17:46220800-46249000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:46230600-46245000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr17:46231000-46243800	Weak transcription	Primary B cells from cord blood	blood
5	chr17:46234000-46240600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr17:46234400-46240600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr17:46235600-46240600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr17:46236000-46241200	Enhancers	Fetal Intestine Large	intestine
9	chr17:46236000-46250200	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr17:46236200-46244200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr17:46236400-46240600	Enhancers	Fetal Kidney	kidney
12	chr17:46236400-46241200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr17:46236400-46241200	Enhancers	Fetal Intestine Small	intestine
14	chr17:46236400-46242600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr17:46236600-46242600	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr17:46236800-46240000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
17	chr17:46236800-46244200	Strong transcription	Primary T cells from cord blood	blood
18	chr17:46237000-46240400	Enhancers	Duodenum Mucosa	Duodenum
19	chr17:46237000-46241200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr17:46237200-46240800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr17:46237400-46242000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr17:46238000-46240800	Weak transcription	Gastric	stomach
23	chr17:46238200-46240000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
24	chr17:46238200-46240200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr17:46238200-46241200	Enhancers	Stomach Mucosa	stomach
26	chr17:46238200-46250800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr17:46238400-46240200	Strong transcription	Fetal Thymus	thymus
28	chr17:46238600-46240000	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr17:46238600-46240200	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr17:46238600-46241000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr17:46238600-46241200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr17:46238600-46241600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
33	chr17:46238600-46246600	Weak transcription	Thymus	Thymus
34	chr17:46238800-46240600	Active TSS	Liver	Liver
35	chr17:46239200-46240200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr17:46239200-46240400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr17:46239200-46246400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr17:46239200-46253800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr17:46239400-46240000	Enhancers	Pancreas	Pancrea
40	chr17:46239600-46240000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr17:46239600-46240400	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr17:46239600-46240800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
43	chr17:46239800-46240000	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr17:46239800-46240400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr17:46239800-46240400	Weak transcription	GM12878-XiMat	blood
46	chr17:46239800-46240800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
47	chr17:46239800-46240800	Flanking Active TSS	HepG2	liver
48	chr17:46239800-46241000	Flanking Active TSS	A549	lung
49	chr17:46239800-46241200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr17:46239800-46241200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links