Variant report

Variant	rs8080662
Chromosome Location	chr17:46190819-46190820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 151 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs1010228	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1010230	0.92[ASN][1000 genomes]
rs10853094	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10853097	0.84[ASN][1000 genomes]
rs11079806	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11079807	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11079808	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079809	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11649919	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11651097	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11655407	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11869625	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12450620	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12600980	1.00[ASN][1000 genomes]
rs12602948	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12936369	0.84[ASN][1000 genomes]
rs12936731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12939514	0.91[ASN][1000 genomes]
rs12941295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12943543	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12946143	0.91[ASN][1000 genomes]
rs12947089	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs12949879	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12950213	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12950402	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12952163	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1316657	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1452662	0.81[ASN][1000 genomes]
rs1452663	1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs1452665	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1452666	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1452667	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1468270	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16951519	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16953927	0.81[ASN][1000 genomes]
rs16953941	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs16954268	1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[JPT][hapmap]
rs16954324	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs17620033	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1860862	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1860866	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1979897	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2021752	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2041572	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs2051821	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2060876	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs208005	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs208008	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs208009	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs208011	0.84[ASN][1000 genomes]
rs208012	0.84[ASN][1000 genomes]
rs208015	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs208019	0.86[ASN][1000 genomes]
rs2109982	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2109983	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2109984	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123341	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2229369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2240120	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2240121	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2240122	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2278868	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2285863	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2305433	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2325783	0.91[ASN][1000 genomes]
rs2325784	0.87[ASN][1000 genomes]
rs2325804	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2325885	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34980108	0.81[ASN][1000 genomes]
rs35361214	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35688835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36071506	0.81[ASN][1000 genomes]
rs3744346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3744347	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3785737	0.96[ASN][1000 genomes]
rs3792692	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs3792694	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs3805370	0.84[CHB][hapmap]
rs3815472	0.88[ASN][1000 genomes]
rs3897986	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs4793779	0.83[CHB][hapmap]
rs4794441	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4794442	0.83[ASN][1000 genomes]
rs4794447	0.83[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs4794448	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4794449	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4794450	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4794451	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4794453	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4995899	0.91[ASN][1000 genomes]
rs55696440	0.84[ASN][1000 genomes]
rs55920502	0.91[ASN][1000 genomes]
rs58203448	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58595405	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58624511	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62064953	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6504024	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6504025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6504031	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504032	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6504108	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs6847	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71356520	0.90[ASN][1000 genomes]
rs71356521	0.86[ASN][1000 genomes]
rs71369829	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7209585	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7209730	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7212202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7213339	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7217496	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7218700	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7220520	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7220768	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7221441	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7222136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7222646	0.86[MKK][hapmap]
rs7223867	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs7224014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7224461	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7225550	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs741058	0.92[ASN][1000 genomes]
rs758999	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs8065670	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8065993	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8066049	0.92[ASN][1000 genomes]
rs8066391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8069263	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs8069889	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8071199	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs8071879	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs8072282	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs8075500	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8076380	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8077860	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8078125	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8079616	0.88[ASN][1000 genomes]
rs875065	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs875066	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9747001	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs978263	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9807087	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9890691	1.00[ASN][1000 genomes]
rs9899275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9899461	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9903692	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9909933	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9910516	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469808	chr17:46049868-46228673	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv482897	chr17:46049868-46228673	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv908576	chr17:46147807-46260366	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
4	esv1007058	chr17:46188741-46200367	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs8080662	NFE2L1	cis	cerebellum	SCAN
rs8080662	RUNDC1	cis	cerebellum	SCAN
rs8080662	SNX11	cis	cerebellum	SCAN
rs8080662	SNX11	cis	Lymphoblastoid	GTEx
rs8080662	DCAKD	cis	cerebellum	SCAN
rs8080662	SNX11	cis	lymphoblastoid	seeQTL
rs8080662	CBX1	cis	cerebellum	SCAN
rs8080662	SNX11	cis	parietal	SCAN
rs8080662	SNX11	cis	multi-tissue	Pritchard
rs8080662	HOXB2	cis	multi-tissue	Pritchard
rs8080662	SNX11	cis	Whole Blood	GTEx
rs8080662	SNX11	cis	Skin Sun Exposed Lower leg	GTEx
rs8080662	TUBG1	cis	parietal	SCAN
rs8080662	KAT2A	cis	parietal	SCAN
rs8080662	RPL27	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46185600-46191000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr17:46185800-46193000	Weak transcription	Gastric	stomach
3	chr17:46185800-46195800	Weak transcription	Ovary	ovary
4	chr17:46186000-46195200	Weak transcription	Aorta	Aorta
5	chr17:46186000-46196200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr17:46186000-46198600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr17:46186200-46192000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr17:46186200-46192600	Weak transcription	Colon Smooth Muscle	Colon
9	chr17:46186200-46192600	Weak transcription	A549	lung
10	chr17:46186200-46193800	Weak transcription	Fetal Lung	lung
11	chr17:46186200-46195000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr17:46186200-46195200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr17:46186200-46196200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr17:46186200-46198600	Weak transcription	Fetal Brain Male	brain
15	chr17:46186200-46203600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr17:46186400-46191800	Weak transcription	Fetal Intestine Large	intestine
17	chr17:46186400-46192200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr17:46186400-46192400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr17:46186400-46193000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr17:46186400-46193000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr17:46186400-46193400	Weak transcription	Osteobl	bone
22	chr17:46186400-46193600	Weak transcription	HSMMtube	muscle
23	chr17:46186400-46194800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr17:46186400-46195000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr17:46186400-46195000	Weak transcription	HSMM	muscle
26	chr17:46186400-46195000	Weak transcription	NHDF-Ad	bronchial
27	chr17:46186400-46195200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr17:46186400-46195400	Weak transcription	Brain Angular Gyrus	brain
29	chr17:46186400-46195400	Weak transcription	NH-A	brain
30	chr17:46186400-46196000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr17:46186400-46196000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr17:46186400-46198600	Weak transcription	Small Intestine	intestine
33	chr17:46186400-46198800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr17:46186600-46192200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr17:46186600-46192600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr17:46186600-46195000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr17:46186600-46195200	Weak transcription	Stomach Mucosa	stomach
38	chr17:46186600-46196000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr17:46187200-46191000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr17:46187600-46191400	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr17:46187600-46198400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr17:46188000-46191200	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
43	chr17:46188000-46192000	Enhancers	Primary T cells fromperipheralblood	blood
44	chr17:46188000-46192200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr17:46188000-46192400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr17:46188000-46192400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr17:46188200-46191400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr17:46188200-46191400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr17:46188200-46192600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr17:46188200-46195000	Weak transcription	Brain Inferior Temporal Lobe	brain

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