Variant report

Variant rs12936731
Chromosome Location chr17:46128359-46128360
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:46124200-46128400 Active TSS HSMMtube muscle
2 chr17:46124400-46132200 Active TSS Psoas Muscle Psoas
3 chr17:46124600-46129600 Active TSS Pancreatic Islets Pancreatic Islet
4 chr17:46126400-46128400 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
5 chr17:46126800-46128400 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr17:46126800-46128400 Enhancers Primary T killer memory cells from peripheral blood blood
7 chr17:46126800-46128600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr17:46126800-46131200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
9 chr17:46127200-46128400 Flanking Active TSS HUVEC blood vessel
10 chr17:46127400-46128400 Enhancers Brain Substantia Nigra brain
11 chr17:46127400-46128400 Enhancers Colon Smooth Muscle Colon
12 chr17:46127400-46131600 Genic enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr17:46127600-46128400 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
14 chr17:46127600-46128800 Genic enhancers Ganglion Eminence derived primary cultured neurospheres brain
15 chr17:46127600-46131000 Genic enhancers H9 Derived Neuron Cultured Cells ES cell derived
16 chr17:46127600-46131000 Genic enhancers Primary T helper 17 cells PMA-I stimulated --
17 chr17:46127600-46131800 Genic enhancers Fetal Stomach stomach
18 chr17:46127600-46132800 Genic enhancers Fetal Intestine Small intestine
19 chr17:46127800-46128400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr17:46127800-46128400 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr17:46127800-46128400 Flanking Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
22 chr17:46127800-46128400 Flanking Active TSS Skeletal Muscle Female skeletal muscle
23 chr17:46127800-46128600 Strong transcription Primary hematopoietic stem cells blood
24 chr17:46127800-46128800 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr17:46127800-46128800 Flanking Active TSS Fetal Heart heart
26 chr17:46127800-46129000 Transcr. at gene 5' and 3' Dnd41 blood
27 chr17:46127800-46129200 Genic enhancers ES-UCSF4 Cell Line embryonic stem cell
28 chr17:46127800-46129200 Genic enhancers Brain Angular Gyrus brain
29 chr17:46127800-46129200 Genic enhancers A549 lung
30 chr17:46127800-46129200 Flanking Active TSS HMEC breast
31 chr17:46127800-46129400 Genic enhancers Brain Anterior Caudate brain
32 chr17:46127800-46129600 Genic enhancers K562 blood
33 chr17:46127800-46130600 Genic enhancers Primary T regulatory cells fromperipheralblood blood
34 chr17:46127800-46130800 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr17:46127800-46130800 Genic enhancers iPS-20b Cell Line embryonic stem cell
36 chr17:46127800-46131000 Genic enhancers Primary hematopoietic stem cells short term culture blood
37 chr17:46127800-46131200 Transcr. at gene 5' and 3' HepG2 liver
38 chr17:46127800-46131600 Transcr. at gene 5' and 3' GM12878-XiMat blood
39 chr17:46127800-46132000 Genic enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr17:46127800-46132600 Genic enhancers Fetal Thymus thymus
41 chr17:46127800-46133000 Genic enhancers Fetal Intestine Large intestine
42 chr17:46127800-46133200 Genic enhancers Primary T cells fromperipheralblood blood
43 chr17:46127800-46133200 Genic enhancers Cortex derived primary cultured neurospheres brain
44 chr17:46127800-46133200 Genic enhancers Placenta Placenta
45 chr17:46127800-46133200 Genic enhancers Pancreas Pancrea
46 chr17:46127800-46133400 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
47 chr17:46127800-46133600 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr17:46128000-46128400 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
49 chr17:46128000-46128400 Flanking Active TSS Liver Liver
50 chr17:46128000-46128400 Flanking Active TSS NH-A brain

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