Variant report

Variant	rs9899275
Chromosome Location	chr17:46129315-46129316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr17:46129020-46129522	HepG2	liver:	n/a	n/a
2	MAX	chr17:46129100-46129421	HepG2	liver:	n/a	n/a
3	MAX	chr17:46128993-46129887	MCF-7	breast:	n/a	chr17:46129725-46129735
4	POLR2A	chr17:46129038-46129483	HepG2	liver:	n/a	n/a
5	MAX	chr17:46129166-46129772	H1-hESC	embryonic stem cell:	n/a	chr17:46129725-46129735
6	CUX1	chr17:46129307-46129466	K562	blood:	n/a	n/a
7	CHD2	chr17:46129208-46129361	GM12878	blood:	n/a	n/a
8	JUND	chr17:46129165-46129566	K562	blood:	n/a	chr17:46129261-46129273
9	FOXP2	chr17:46129179-46129340	SK-N-MC	brain:	n/a	n/a
10	MAX	chr17:46129076-46129780	HepG2	liver:	n/a	chr17:46129725-46129735
11	ZMIZ1	chr17:46129238-46129607	K562	blood:	n/a	n/a
12	MAX	chr17:46129106-46129520	K562	blood:	n/a	n/a
13	SP1	chr17:46129046-46129543	HepG2	liver:	n/a	chr17:46129286-46129300
14	EP300	chr17:46129203-46129530	K562	blood:	n/a	n/a
15	NFIC	chr17:46128962-46129773	SK-N-SH	brain:	n/a	n/a
16	TBL1XR1	chr17:46129181-46129530	K562	blood:	n/a	n/a
17	MYC	chr17:46129148-46129645	MCF10A-Er-Src	breast:	n/a	n/a
18	CHD2	chr17:46129103-46129414	Hela-S3	cervix:	n/a	n/a
19	CTCF	chr17:46129240-46129390	HAc	cerebellar:	n/a	n/a
20	HDAC2	chr17:46129123-46129470	K562	blood:	n/a	n/a
21	SIN3AK20	chr17:46128602-46129915	MCF-7	breast:	n/a	n/a
22	FOS	chr17:46129078-46129437	MCF10A-Er-Src	breast:	n/a	chr17:46129261-46129273
23	TBL1XR1	chr17:46129245-46129588	K562	blood:	n/a	n/a
24	EP300	chr17:46128986-46129560	HepG2	liver:	n/a	n/a
25	MAX	chr17:46129079-46129851	H1-hESC	embryonic stem cell:	n/a	chr17:46129725-46129735
26	MXI1	chr17:46128649-46132036	IMR90	lung:	n/a	n/a
27	MXI1	chr17:46129145-46129829	H1-hESC	embryonic stem cell:	n/a	n/a
28	EP300	chr17:46129157-46129527	K562	blood:	n/a	n/a
29	BHLHE40	chr17:46129120-46129526	K562	blood:	n/a	n/a
30	NR3C1	chr17:46129002-46129497	A549	lung:	n/a	chr17:46129055-46129081 chr17:46129095-46129102 chr17:46129055-46129081
31	NR3C1	chr17:46129094-46129353	A549	lung:	n/a	chr17:46129095-46129102
32	MXI1	chr17:46129175-46129790	GM12878	blood:	n/a	n/a
33	CHD2	chr17:46129145-46129424	K562	blood:	n/a	n/a
34	FOXA1	chr17:46129020-46129510	HepG2	liver:	n/a	n/a
35	POLR2A	chr17:46129314-46129561	HUVEC	blood vessel:	n/a	n/a
36	HNF4G	chr17:46129026-46129410	HepG2	liver:	n/a	chr17:46129181-46129196
37	ZNF143	chr17:46129202-46129542	K562	blood:	n/a	n/a
38	NR2F2	chr17:46128764-46129504	MCF-7	breast:	n/a	n/a
39	TEAD4	chr17:46129047-46129621	K562	blood:	n/a	n/a
40	EP300	chr17:46129125-46129508	HepG2	liver:	n/a	n/a
41	POLR2A	chr17:46129126-46129366	MCF10A-Er-Src	breast:	n/a	n/a
42	POLR2A	chr17:46128634-46129485	Hela-S3	cervix:	n/a	n/a
43	MYC	chr17:46129123-46129602	K562	blood:	n/a	n/a
44	ZC3H11A	chr17:46129245-46129737	K562	blood:	n/a	n/a
45	SIN3A	chr17:46128890-46129957	H1-hESC	embryonic stem cell:	n/a	chr17:46129719-46129732
46	MYC	chr17:46129002-46129583	MCF10A-Er-Src	breast:	n/a	n/a
47	EP300	chr17:46129261-46129654	SK-N-SH_RA	brain:	n/a	chr17:46129581-46129595
48	POLR2A	chr17:46129306-46129442	GM12878	blood:	n/a	n/a
49	POLR2A	chr17:46129111-46129695	HCT-116	colon:	n/a	n/a
50	FOS	chr17:46129189-46129436	MCF10A-Er-Src	breast:	n/a	chr17:46129261-46129273

No.	Distal block	Cell Line	Cell type
1	chr17:46125014..46129511-chr17:46182877..46189561,8	K562	blood:
2	chr17:46126873..46129547-chr17:46183603..46186310,2	MCF-7	breast:
3	chr17:46129155..46131443-chr17:46151423..46153191,2	K562	blood:
4	chr17:46127803..46129667-chr17:46189331..46192253,2	MCF-7	breast:
5	chr17:46127435..46129625-chr17:46209916..46212813,2	MCF-7	breast:

Variant related genes	Relation type
NFE2L1	TF binding region
ENSG00000263412	TF binding region
ENSG00000002919	Chromatin interaction

Extended variants
information (count: 127 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs1010228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1010230	0.81[ASN][1000 genomes]
rs10853094	0.82[EUR][1000 genomes]
rs11079806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11079808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11079809	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11649919	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11651097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11655407	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11869625	0.83[AMR][1000 genomes]
rs12450620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12600980	0.89[ASN][1000 genomes]
rs12936731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12939514	0.80[ASN][1000 genomes]
rs12941295	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12943543	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12946143	0.98[ASN][1000 genomes]
rs12947089	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs12949879	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12950213	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12950402	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12952163	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1316657	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1452663	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs1452665	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs1452666	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1452667	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1468270	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16951519	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16953941	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs16954268	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs16954324	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs17620033	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1860862	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1860866	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1979897	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2021752	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2041572	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs2051821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2060876	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs208005	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs208008	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs208009	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs208015	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2109982	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2109983	0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2109984	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2123341	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2229369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2240120	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs2240121	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2240122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2278868	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2285863	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2305433	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2325783	0.98[ASN][1000 genomes]
rs2325804	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs35361214	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35688835	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3744346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3744347	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3785737	0.85[ASN][1000 genomes]
rs3792692	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs3792694	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs3805370	0.85[CHB][hapmap]
rs3897986	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs4793779	0.84[CHB][hapmap]
rs4794441	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4794447	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs4794448	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4794449	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4794450	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4794451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4794453	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4995899	0.98[ASN][1000 genomes]
rs55920502	0.98[ASN][1000 genomes]
rs58203448	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58595405	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58624511	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62064953	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6504024	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6504025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6504031	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6504032	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6504108	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs6847	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71369829	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7209585	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7209730	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7212202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7213339	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7217496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7218700	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7220520	1.00[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7220768	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7221441	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7222136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7223867	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7224014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7224461	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7225550	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs741058	0.81[ASN][1000 genomes]
rs758999	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs8065670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8065993	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8066049	0.82[ASN][1000 genomes]
rs8066391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8069263	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs8069889	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8071199	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs8071879	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs8072282	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs8075500	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8076380	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8077860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8078125	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8080662	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs875065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs875066	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9747001	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs978263	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9807087	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9890691	0.89[ASN][1000 genomes]
rs9899461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910516	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469808	chr17:46049868-46228673	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv482897	chr17:46049868-46228673	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs9899275	SNX11	cis	Lymphoblastoid	GTEx
rs9899275	SNX11	cis	Skin Sun Exposed Lower leg	GTEx
rs9899275	SNX11	cis	Whole Blood	GTEx
rs9899275	CBX1	Cis_1M	lymphoblastoid	RTeQTL
rs9899275	SNX11	cis	multi-tissue	Pritchard
rs9899275	PNPO	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46124400-46132200	Active TSS	Psoas Muscle	Psoas
2	chr17:46124600-46129600	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr17:46126800-46131200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr17:46127400-46131600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:46127600-46131000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr17:46127600-46131000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr17:46127600-46131800	Genic enhancers	Fetal Stomach	stomach
8	chr17:46127600-46132800	Genic enhancers	Fetal Intestine Small	intestine
9	chr17:46127800-46129400	Genic enhancers	Brain Anterior Caudate	brain
10	chr17:46127800-46129600	Genic enhancers	K562	blood
11	chr17:46127800-46130600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr17:46127800-46130800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr17:46127800-46130800	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr17:46127800-46131000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr17:46127800-46131200	Transcr. at gene 5' and 3'	HepG2	liver
16	chr17:46127800-46131600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
17	chr17:46127800-46132000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr17:46127800-46132600	Genic enhancers	Fetal Thymus	thymus
19	chr17:46127800-46133000	Genic enhancers	Fetal Intestine Large	intestine
20	chr17:46127800-46133200	Genic enhancers	Primary T cells fromperipheralblood	blood
21	chr17:46127800-46133200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
22	chr17:46127800-46133200	Genic enhancers	Placenta	Placenta
23	chr17:46127800-46133200	Genic enhancers	Pancreas	Pancrea
24	chr17:46127800-46133400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr17:46127800-46133600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr17:46128000-46130000	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
27	chr17:46128000-46130200	Genic enhancers	HUES64 Cell Line	embryonic stem cell
28	chr17:46128000-46130400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr17:46128000-46130400	Genic enhancers	Primary monocytes fromperipheralblood	blood
30	chr17:46128000-46130400	Genic enhancers	Brain Cingulate Gyrus	brain
31	chr17:46128000-46130400	Transcr. at gene 5' and 3'	Brain Hippocampus Middle	brain
32	chr17:46128000-46130800	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr17:46128000-46130800	Genic enhancers	H1 Cell Line	embryonic stem cell
34	chr17:46128000-46130800	Genic enhancers	Fetal Lung	lung
35	chr17:46128000-46131200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
36	chr17:46128000-46131200	Transcr. at gene 5' and 3'	Duodenum Mucosa	Duodenum
37	chr17:46128000-46131600	Genic enhancers	Esophagus	oesophagus
38	chr17:46128000-46131600	Transcr. at gene 5' and 3'	NHEK	skin
39	chr17:46128000-46131800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
40	chr17:46128000-46131800	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 29	rectum
41	chr17:46128000-46132000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr17:46128000-46132600	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr17:46128000-46132600	Transcr. at gene 5' and 3'	Fetal Muscle Trunk	muscle
44	chr17:46128000-46133000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
45	chr17:46128000-46133200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr17:46128000-46133800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr17:46128000-46134000	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr17:46128000-46134000	Genic enhancers	Gastric	stomach
49	chr17:46128000-46134000	Genic enhancers	Monocytes-CD14+_RO01746	blood
50	chr17:46128000-46134400	Genic enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links