The 2.0 version of rSNPBase

Variant report

Variant rs12950402
Chromosome Location chr17:46180114-46180115
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:46178400-46184200 Weak transcription Fetal Heart heart
2 chr17:46179200-46180400 Enhancers Primary B cells from peripheral blood blood
3 chr17:46179200-46180600 Weak transcription Primary T helper cells PMA-I stimulated --
4 chr17:46179200-46180600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
5 chr17:46179200-46180600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr17:46179200-46180800 Enhancers Primary hematopoietic stem cells short term culture blood
7 chr17:46179200-46180800 Weak transcription Brain Substantia Nigra brain
8 chr17:46179200-46181000 Enhancers Primary T killer naive cells fromperipheralblood blood
9 chr17:46179200-46181000 Enhancers Primary T killer memory cells from peripheral blood blood
10 chr17:46179200-46181200 Enhancers Primary hematopoietic stem cells blood
11 chr17:46179200-46181800 Enhancers Primary monocytes fromperipheralblood blood
12 chr17:46179200-46183800 Weak transcription Brain Hippocampus Middle brain
13 chr17:46179200-46184000 Weak transcription Spleen Spleen
14 chr17:46179200-46184000 Weak transcription HepG2 liver
15 chr17:46179200-46184200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
16 chr17:46179200-46184200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr17:46179200-46184200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr17:46179200-46184200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
19 chr17:46179200-46184200 Weak transcription Fetal Muscle Trunk muscle
20 chr17:46179200-46184200 Weak transcription Left Ventricle heart
21 chr17:46179200-46184200 Weak transcription Pancreas Pancrea
22 chr17:46179200-46184200 Weak transcription Rectal Mucosa Donor 31 rectum
23 chr17:46179200-46184400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr17:46179400-46182400 Enhancers Primary Natural Killer cells fromperipheralblood blood
25 chr17:46179400-46183800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
26 chr17:46179400-46184000 Weak transcription Stomach Smooth Muscle stomach
27 chr17:46179400-46184200 Weak transcription Primary T cells from cord blood blood
28 chr17:46179400-46184200 Weak transcription Brain Inferior Temporal Lobe brain
29 chr17:46179400-46184200 Weak transcription Colonic Mucosa Colon
30 chr17:46179400-46184200 Weak transcription Duodenum Mucosa Duodenum
31 chr17:46179400-46184200 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr17:46179600-46180600 Weak transcription Fetal Thymus thymus
33 chr17:46179600-46180800 Weak transcription Primary T helper naive cells from peripheral blood blood
34 chr17:46179600-46180800 Weak transcription Primary T helper naive cells fromperipheralblood blood
35 chr17:46179600-46180800 Weak transcription Primary T helper cells fromperipheralblood blood
36 chr17:46179600-46183800 Weak transcription Primary T regulatory cells fromperipheralblood blood
37 chr17:46179600-46184000 Weak transcription Liver Liver
38 chr17:46179600-46184000 Weak transcription Dnd41 blood
39 chr17:46179600-46184000 Weak transcription Hela-S3 cervix
40 chr17:46179600-46184200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr17:46179600-46184200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
42 chr17:46179600-46184200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
43 chr17:46179600-46184200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr17:46179600-46184200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
45 chr17:46179600-46184200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr17:46179600-46184200 Weak transcription Brain Cingulate Gyrus brain
47 chr17:46179600-46184200 Weak transcription Colon Smooth Muscle Colon
48 chr17:46179600-46184200 Weak transcription Rectal Mucosa Donor 29 rectum
49 chr17:46179600-46184200 Weak transcription NHEK skin
50 chr17:46179600-46184400 Weak transcription NHDF-Ad bronchial

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Last update: Aug 31, 2015