The 2.0 version of rSNPBase

Variant report

Variant rs12936369
Chromosome Location chr17:46270696-46270697
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:46251200-46277400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
2 chr17:46252000-46271400 Strong transcription Primary T regulatory cells fromperipheralblood blood
3 chr17:46252600-46271000 Strong transcription Primary T helper cells fromperipheralblood blood
4 chr17:46253200-46270800 Strong transcription Primary T helper cells PMA-I stimulated --
5 chr17:46254000-46271000 Weak transcription Primary hematopoietic stem cells blood
6 chr17:46255000-46270800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
7 chr17:46255200-46270800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
8 chr17:46265600-46271000 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr17:46265800-46276200 Weak transcription GM12878-XiMat blood
10 chr17:46266200-46270800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
11 chr17:46266800-46271000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr17:46266800-46271400 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr17:46266800-46298600 Weak transcription Thymus Thymus
14 chr17:46266800-46318200 Weak transcription Primary B cells from peripheral blood blood
15 chr17:46267000-46271000 Weak transcription Primary T helper naive cells from peripheral blood blood
16 chr17:46267400-46271200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr17:46268000-46271400 Strong transcription Primary T cells from cord blood blood
18 chr17:46268200-46271000 Strong transcription Primary T cells fromperipheralblood blood
19 chr17:46268400-46271800 Enhancers ES-UCSF4 Cell Line embryonic stem cell
20 chr17:46268400-46272400 Enhancers ES-WA7 Cell Line embryonic stem cell
21 chr17:46269200-46271200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
22 chr17:46269200-46272000 Enhancers H1 Cell Line embryonic stem cell
23 chr17:46269400-46270800 Enhancers Fetal Brain Male brain
24 chr17:46269400-46271400 Weak transcription Primary T helper naive cells fromperipheralblood blood
25 chr17:46269600-46272000 Enhancers Osteobl bone
26 chr17:46270000-46271000 Enhancers Brain Germinal Matrix brain
27 chr17:46270000-46271400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
28 chr17:46270000-46271600 Weak transcription A549 lung
29 chr17:46270200-46271400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr17:46270200-46271400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr17:46270200-46272600 Enhancers HUES48 Cell Line embryonic stem cell
32 chr17:46270200-46272600 Enhancers HUES6 Cell Line embryonic stem cell
33 chr17:46270400-46270800 Weak transcription HSMM muscle
34 chr17:46270400-46270800 Weak transcription NH-A brain
35 chr17:46270400-46271000 Genic enhancers Primary T helper 17 cells PMA-I stimulated --
36 chr17:46270400-46271400 Weak transcription iPS-18 Cell Line embryonic stem cell
37 chr17:46270400-46271800 Weak transcription HSMMtube muscle
38 chr17:46270400-46272400 Enhancers HUES64 Cell Line embryonic stem cell
39 chr17:46270400-46272600 Enhancers ES-I3 Cell Line embryonic stem cell
40 chr17:46270400-46272600 Enhancers iPS-15b Cell Line embryonic stem cell
41 chr17:46270400-46272600 Enhancers iPS-20b Cell Line embryonic stem cell
42 chr17:46270600-46270800 Genic enhancers Fetal Thymus thymus
43 chr17:46270600-46271200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015