Variant report

Variant	rs10853098
Chromosome Location	chr17:46236581-46236582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46227948..46230342-chr17:46234460..46237346,3	K562	blood:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs1002330	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1010228	0.80[ASN][1000 genomes]
rs1010230	0.80[ASN][1000 genomes]
rs10445339	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10445377	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079809	0.80[ASN][1000 genomes]
rs11079814	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11870056	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11872095	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12150533	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12452956	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12603115	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12603380	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12936369	0.82[ASN][1000 genomes]
rs12941830	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12947089	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12948810	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1316657	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1377201	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1452662	0.80[ASN][1000 genomes]
rs1452663	0.80[ASN][1000 genomes]
rs1452665	0.80[ASN][1000 genomes]
rs1452666	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1452667	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16953927	0.80[ASN][1000 genomes]
rs16953941	0.80[ASN][1000 genomes]
rs17620033	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17681336	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860862	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1860863	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1860866	0.80[ASN][1000 genomes]
rs2021752	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2021811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2041572	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2060876	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs208005	0.84[ASN][1000 genomes]
rs208008	0.84[ASN][1000 genomes]
rs208009	0.84[ASN][1000 genomes]
rs208011	0.82[ASN][1000 genomes]
rs208012	0.82[ASN][1000 genomes]
rs208019	0.84[ASN][1000 genomes]
rs2109982	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2109983	0.80[ASN][1000 genomes]
rs2123341	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2278868	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2305433	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2325784	0.83[ASN][1000 genomes]
rs2325804	0.84[ASN][1000 genomes]
rs2325885	0.80[ASN][1000 genomes]
rs2938483	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34949267	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34980108	0.80[ASN][1000 genomes]
rs36071506	0.80[ASN][1000 genomes]
rs3744346	0.80[ASN][1000 genomes]
rs3792692	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792694	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805363	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805370	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805371	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3815472	0.84[ASN][1000 genomes]
rs3897986	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3944039	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4793779	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4794447	0.89[ASN][1000 genomes]
rs4794505	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4794517	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4794525	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55696440	0.82[ASN][1000 genomes]
rs55982346	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62066407	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62066447	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6504108	0.96[ASN][1000 genomes]
rs66683298	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67446770	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71356521	0.82[ASN][1000 genomes]
rs7209730	0.80[ASN][1000 genomes]
rs7210149	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7213876	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7219967	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7220619	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7220768	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7220922	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222136	0.80[ASN][1000 genomes]
rs7223867	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224461	0.80[ASN][1000 genomes]
rs7225435	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7225550	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225865	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs741058	0.80[ASN][1000 genomes]
rs7501770	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs758999	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8069064	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8069263	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8072282	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8075270	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8079616	0.84[ASN][1000 genomes]
rs882380	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs954226	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9807087	0.80[ASN][1000 genomes]
rs9903692	0.82[ASN][1000 genomes]
rs9909933	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908576	chr17:46147807-46260366	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46200400-46236600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr17:46216400-46251400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr17:46220800-46249000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr17:46221600-46238400	Weak transcription	Fetal Thymus	thymus
5	chr17:46228400-46236600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr17:46230200-46237400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr17:46230600-46245000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr17:46231000-46236600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr17:46231000-46243800	Weak transcription	Primary B cells from cord blood	blood
10	chr17:46231800-46238200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr17:46232000-46236600	Weak transcription	A549	lung
12	chr17:46232000-46238000	Weak transcription	Pancreas	Pancrea
13	chr17:46232000-46239000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr17:46232000-46239800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr17:46232400-46237000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr17:46233400-46238200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr17:46234000-46237000	Weak transcription	HSMMtube	muscle
18	chr17:46234000-46240600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr17:46234200-46236600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr17:46234200-46236800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr17:46234200-46238000	Weak transcription	Thymus	Thymus
22	chr17:46234400-46237600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr17:46234400-46238400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr17:46234400-46239600	Weak transcription	GM12878-XiMat	blood
25	chr17:46234400-46240600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr17:46234600-46236600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr17:46234600-46236800	Weak transcription	Primary T cells from cord blood	blood
28	chr17:46235200-46236600	Weak transcription	Liver	Liver
29	chr17:46235600-46240600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr17:46236000-46241200	Enhancers	Fetal Intestine Large	intestine
31	chr17:46236000-46250200	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr17:46236200-46236600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr17:46236200-46244200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr17:46236400-46236600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
35	chr17:46236400-46236600	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr17:46236400-46236800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
37	chr17:46236400-46237200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
38	chr17:46236400-46237200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
39	chr17:46236400-46237400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
40	chr17:46236400-46237600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
41	chr17:46236400-46238200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr17:46236400-46240600	Enhancers	Fetal Kidney	kidney
43	chr17:46236400-46241200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr17:46236400-46241200	Enhancers	Fetal Intestine Small	intestine
45	chr17:46236400-46242600	Strong transcription	Primary T helper cells fromperipheralblood	blood

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