Variant report

Variant	rs66683298
Chromosome Location	chr17:46277748-46277749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1002330	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10445339	0.80[EUR][1000 genomes]
rs10853098	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11079814	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11870056	0.82[EUR][1000 genomes]
rs11872095	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12150533	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12452956	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12941830	0.82[EUR][1000 genomes]
rs12947089	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1316657	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17620033	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17681336	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1860862	0.82[AMR][1000 genomes]
rs1860863	0.82[AMR][1000 genomes]
rs2021752	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2021811	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2060876	0.82[AFR][1000 genomes]
rs2109982	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2123341	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2278868	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2305433	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3792692	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3792694	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3805363	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3805370	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3805371	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3897986	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4794505	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4794517	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4794525	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55982346	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62066447	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7210149	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7213876	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7219967	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7220768	0.82[EUR][1000 genomes]
rs7220922	0.82[EUR][1000 genomes]
rs7223867	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7225435	0.81[AMR][1000 genomes]
rs7225550	0.82[EUR][1000 genomes]
rs8069064	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8069263	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8072282	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8075270	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs882380	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs954226	0.84[AFR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46266800-46298600	Weak transcription	Thymus	Thymus
2	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr17:46273200-46293000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr17:46273200-46302800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr17:46273200-46314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr17:46273600-46287200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr17:46273800-46278000	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr17:46274000-46290000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr17:46274200-46283200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr17:46274200-46297200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr17:46274600-46277800	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr17:46275000-46282600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr17:46275200-46287400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr17:46275400-46286800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr17:46276000-46281400	Strong transcription	Primary T cells from cord blood	blood
16	chr17:46277400-46280000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr17:46277400-46281000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr17:46277400-46287200	Weak transcription	GM12878-XiMat	blood

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