Variant report

Variant	rs4794525
Chromosome Location	chr17:46298358-46298359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46296978..46298715-chr17:46299496..46302023,2	K562	blood:
2	chr17:46297106..46299092-chr17:46317071..46320031,2	K562	blood:
3	chr17:46297134..46298953-chr17:46333479..46335931,2	K562	blood:
4	chr17:46297106..46299092-chr17:46317071..46320404,3	K562	blood:
5	chr17:46297000..46299844-chr17:46338124..46340489,2	K562	blood:
6	chr17:46297342..46300258-chr17:46302052..46303891,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1002330	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10445339	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10445377	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10853098	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11079814	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11870056	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11872095	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12150533	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12452956	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12603115	0.82[EUR][1000 genomes]
rs12936369	0.80[ASN][1000 genomes]
rs12941830	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12947089	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12948810	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12952670	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1316657	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1377201	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1452662	0.82[ASN][1000 genomes]
rs1452663	0.82[ASN][1000 genomes]
rs1452665	0.82[ASN][1000 genomes]
rs1452666	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1452667	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16953927	0.82[ASN][1000 genomes]
rs16953941	0.82[ASN][1000 genomes]
rs17620033	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17681336	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1860862	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1860863	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2021752	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2021811	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2041572	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2060876	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs208011	0.80[ASN][1000 genomes]
rs208012	0.80[ASN][1000 genomes]
rs2109982	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2123341	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2278868	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2305433	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2325885	0.82[ASN][1000 genomes]
rs2924257	0.80[EUR][1000 genomes]
rs2938483	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34949267	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34980108	0.82[ASN][1000 genomes]
rs36071506	0.82[ASN][1000 genomes]
rs3792692	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3792694	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3805363	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3805370	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3805371	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3897986	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3944039	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4793779	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4794447	0.83[ASN][1000 genomes]
rs4794505	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4794517	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55696440	0.80[ASN][1000 genomes]
rs55982346	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62066407	0.85[EUR][1000 genomes]
rs62066447	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6504108	0.98[ASN][1000 genomes]
rs66683298	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7210149	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7213876	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7219967	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7220619	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7220768	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7220922	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7223867	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7225435	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7225550	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7225865	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7501770	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs758999	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8069064	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8069263	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8072282	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8075270	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs882380	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs954226	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9903692	0.80[ASN][1000 genomes]
rs9909933	0.82[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46266800-46298600	Weak transcription	Thymus	Thymus
2	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr17:46273200-46302800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr17:46273200-46314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:46283600-46314000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr17:46288400-46307000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr17:46292800-46298600	Strong transcription	Primary T cells from cord blood	blood
8	chr17:46293800-46301000	Weak transcription	HUVEC	blood vessel
9	chr17:46294000-46318000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr17:46295000-46301600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr17:46295000-46304400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr17:46295200-46303000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr17:46295800-46303200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr17:46295800-46314200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr17:46296000-46300600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr17:46297400-46300600	Weak transcription	A549	lung
17	chr17:46297400-46301600	Weak transcription	GM12878-XiMat	blood
18	chr17:46297400-46302000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr17:46297400-46302800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr17:46297600-46299400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr17:46297600-46302200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr17:46297600-46314400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr17:46297800-46302800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr17:46298000-46306000	Weak transcription	K562	blood
25	chr17:46298200-46298600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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