Variant report

Variant	rs11872095
Chromosome Location	chr17:46271172-46271173
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46100886..46103222-chr17:46270913..46273515,2	MCF-7	breast:
2	chr17:46263314..46264910-chr17:46270431..46272885,2	MCF-7	breast:
3	chr17:46263086..46264768-chr17:46269290..46271613,2	K562	blood:
4	chr17:46269238..46271294-chr17:46685390..46688185,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260027	Chromatin interaction
ENSG00000263787	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1002330	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10445339	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10445377	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10853098	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11079814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11870056	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12150533	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12452956	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12603115	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12936369	0.84[ASN][1000 genomes]
rs12941830	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12947089	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12948810	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12952670	0.84[EUR][1000 genomes]
rs1316657	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1377201	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1452662	0.82[ASN][1000 genomes]
rs1452663	0.82[ASN][1000 genomes]
rs1452665	0.82[ASN][1000 genomes]
rs1452666	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1452667	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16953927	0.82[ASN][1000 genomes]
rs16953941	0.82[ASN][1000 genomes]
rs17620033	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17681336	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1860862	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1860863	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2021752	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2021811	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2041572	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2060876	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs208005	0.82[ASN][1000 genomes]
rs208008	0.82[ASN][1000 genomes]
rs208009	0.82[ASN][1000 genomes]
rs208011	0.84[ASN][1000 genomes]
rs208012	0.84[ASN][1000 genomes]
rs208019	0.82[ASN][1000 genomes]
rs2109982	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2123341	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278868	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305433	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2325784	0.81[ASN][1000 genomes]
rs2325804	0.82[ASN][1000 genomes]
rs2325885	0.82[ASN][1000 genomes]
rs2938483	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34949267	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34980108	0.82[ASN][1000 genomes]
rs36071506	0.82[ASN][1000 genomes]
rs3792692	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3792694	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805363	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805370	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805371	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3815472	0.82[ASN][1000 genomes]
rs3897986	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3944039	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4793779	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4794447	0.87[ASN][1000 genomes]
rs4794505	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4794517	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4794525	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55696440	0.84[ASN][1000 genomes]
rs55982346	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62066407	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62066447	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6504108	0.98[ASN][1000 genomes]
rs66683298	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67446770	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71356521	0.80[ASN][1000 genomes]
rs7210149	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7213876	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219967	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7220619	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7220768	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7220922	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7223867	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7225435	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7225550	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7225865	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7501770	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs758999	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8069064	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8069263	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8072282	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8075270	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079616	0.82[ASN][1000 genomes]
rs882380	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs954226	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9903692	0.84[ASN][1000 genomes]
rs9909933	0.82[ASN][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46251200-46277400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr17:46252000-46271400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr17:46265800-46276200	Weak transcription	GM12878-XiMat	blood
4	chr17:46266800-46271400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr17:46266800-46298600	Weak transcription	Thymus	Thymus
6	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr17:46267400-46271200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr17:46268000-46271400	Strong transcription	Primary T cells from cord blood	blood
9	chr17:46268400-46271800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr17:46268400-46272400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr17:46269200-46271200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr17:46269200-46272000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr17:46269400-46271400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr17:46269600-46272000	Enhancers	Osteobl	bone
15	chr17:46270000-46271400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr17:46270000-46271600	Weak transcription	A549	lung
17	chr17:46270200-46271400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr17:46270200-46271400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr17:46270200-46272600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr17:46270200-46272600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr17:46270400-46271400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr17:46270400-46271800	Weak transcription	HSMMtube	muscle
23	chr17:46270400-46272400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr17:46270400-46272600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr17:46270400-46272600	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr17:46270400-46272600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr17:46270600-46271200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr17:46270800-46271200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr17:46270800-46271200	Enhancers	H9 Cell Line	embryonic stem cell
30	chr17:46270800-46271200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr17:46270800-46271200	Strong transcription	Fetal Thymus	thymus
32	chr17:46270800-46272600	Enhancers	NH-A	brain
33	chr17:46270800-46272800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr17:46270800-46272800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr17:46270800-46272800	Enhancers	HSMM	muscle
36	chr17:46271000-46271200	Genic enhancers	Primary T cells fromperipheralblood	blood
37	chr17:46271000-46271200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
38	chr17:46271000-46272200	Enhancers	Primary hematopoietic stem cells	blood
39	chr17:46271000-46272200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr17:46271000-46272400	Enhancers	Muscle Satellite Cultured Cells	--
41	chr17:46271000-46272400	Enhancers	HUVEC	blood vessel
42	chr17:46271000-46273200	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr17:46271000-46273200	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr17:46271000-46273600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr17:46271000-46274200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr17:46271000-46274600	Enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links