Variant report

Variant	rs3744346
Chromosome Location	chr17:46198876-46198877
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:46183064..46186607-chr17:46198439..46200674,3	MCF-7	breast:
2	chr17:46185085..46187937-chr17:46198335..46200407,2	K562	blood:
3	chr17:46123246..46128677-chr17:46197755..46203630,8	MCF-7	breast:
4	chr17:46198773..46201065-chr17:46205294..46206959,2	K562	blood:
5	chr17:46197608..46199562-chr17:46200754..46203056,2	MCF-7	breast:
6	chr17:46197348..46200242-chr17:46209628..46212447,2	MCF-7	breast:
7	chr17:46108859..46110468-chr17:46197931..46199848,2	MCF-7	breast:
8	chr17:46183569..46185892-chr17:46198700..46202089,3	K562	blood:
9	chr17:46183753..46186040-chr17:46196094..46199275,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000263412	Chromatin interaction
ENSG00000002919	Chromatin interaction
ENSG00000082641	Chromatin interaction

Extended variants
information (count: 164 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs1002330	0.80[ASN][1000 genomes]
rs1010228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1010230	1.00[ASN][1000 genomes]
rs10445377	0.80[ASN][1000 genomes]
rs10853094	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10853097	0.91[ASN][1000 genomes]
rs10853098	0.80[ASN][1000 genomes]
rs11079806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11079807	0.84[AFR][1000 genomes]
rs11079808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11079809	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11649919	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11651097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11655407	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11869625	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12450620	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12600980	0.92[ASN][1000 genomes]
rs12602948	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12936369	0.91[ASN][1000 genomes]
rs12936731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12939334	0.80[ASN][1000 genomes]
rs12939514	0.88[ASN][1000 genomes]
rs12941295	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12941830	0.80[ASN][1000 genomes]
rs12943543	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12946143	0.83[ASN][1000 genomes]
rs12946208	0.80[ASN][1000 genomes]
rs12947089	0.85[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs12949879	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12950213	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12950402	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12952163	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1316657	0.85[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs1452662	0.89[ASN][1000 genomes]
rs1452663	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs1452665	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1452666	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1452667	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1468270	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16951519	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16953927	0.89[ASN][1000 genomes]
rs16953941	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs16954268	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs16954324	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs17620033	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs17681336	0.80[ASN][1000 genomes]
rs1860862	0.85[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs1860863	0.84[ASN][1000 genomes]
rs1860866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1979897	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2021752	0.85[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs2041572	0.86[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs2051821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2060876	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs208005	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs208008	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs208009	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs208011	0.91[ASN][1000 genomes]
rs208012	0.91[ASN][1000 genomes]
rs208015	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs208019	0.93[ASN][1000 genomes]
rs2109982	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2109983	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2109984	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2123341	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2229369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2240120	1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2240121	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2240122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2278868	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2285863	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2305433	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2325783	0.83[ASN][1000 genomes]
rs2325784	0.94[ASN][1000 genomes]
rs2325804	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs2325885	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34949267	0.80[ASN][1000 genomes]
rs34980108	0.89[ASN][1000 genomes]
rs35361214	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35688835	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36071506	0.89[ASN][1000 genomes]
rs3744347	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3785737	0.88[ASN][1000 genomes]
rs3792692	0.85[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs3792694	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs3805370	0.85[CHB][hapmap]
rs3815472	0.95[ASN][1000 genomes]
rs3897789	0.80[ASN][1000 genomes]
rs3897986	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs3944039	0.84[ASN][1000 genomes]
rs4793779	0.84[CHB][hapmap]
rs4794441	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4794447	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs4794448	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4794449	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4794450	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4794451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4794453	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4995899	0.83[ASN][1000 genomes]
rs55696440	0.91[ASN][1000 genomes]
rs55920502	0.83[ASN][1000 genomes]
rs58203448	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58595405	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58624511	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62064953	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6504024	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6504025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6504031	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6504032	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6504108	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs67345313	0.80[ASN][1000 genomes]
rs6847	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71356520	0.98[ASN][1000 genomes]
rs71356521	0.93[ASN][1000 genomes]
rs71369829	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7209585	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7209730	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7212202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7213339	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7217496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7218700	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7220520	1.00[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7220768	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7220922	0.80[ASN][1000 genomes]
rs7221441	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7222136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7223867	0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs7224014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7224461	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7225550	0.86[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs7225865	0.82[ASN][1000 genomes]
rs741058	1.00[ASN][1000 genomes]
rs758999	0.86[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs8065670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8065993	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8066049	0.89[ASN][1000 genomes]
rs8066391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8069263	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs8069889	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8071199	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8071879	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs8072282	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs8075500	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8076380	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8077860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8078125	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8079616	0.95[ASN][1000 genomes]
rs8080662	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs875065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs875066	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9747001	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs978263	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9807087	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9889470	0.80[ASN][1000 genomes]
rs9890691	0.92[ASN][1000 genomes]
rs9899275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9899461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9903692	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9909933	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9910516	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469808	chr17:46049868-46228673	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv482897	chr17:46049868-46228673	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv908576	chr17:46147807-46260366	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
4	esv1007058	chr17:46188741-46200367	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3744346	SNX11	cis	Skin Sun Exposed Lower leg	GTEx
rs3744346	PNPO	Cis_1M	lymphoblastoid	RTeQTL
rs3744346	SNX11	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46186200-46203600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr17:46188200-46201200	Strong transcription	Fetal Intestine Small	intestine
3	chr17:46188200-46207400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr17:46188400-46201400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr17:46189000-46202600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr17:46189200-46199000	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr17:46189400-46204200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr17:46189600-46200600	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr17:46189600-46201800	Strong transcription	Fetal Muscle Leg	muscle
10	chr17:46189800-46202000	Strong transcription	Fetal Stomach	stomach
11	chr17:46190000-46201400	Strong transcription	Lung	lung
12	chr17:46190000-46204800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr17:46190200-46201600	Strong transcription	Liver	Liver
14	chr17:46190400-46200600	Strong transcription	Fetal Muscle Trunk	muscle
15	chr17:46190400-46201600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr17:46190400-46205000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr17:46190800-46201400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr17:46191200-46201800	Strong transcription	Adipose Nuclei	Adipose
19	chr17:46191200-46220800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr17:46191600-46204600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr17:46191800-46201200	Strong transcription	Fetal Intestine Large	intestine
22	chr17:46191800-46201600	Strong transcription	Primary T cells from cord blood	blood
23	chr17:46191800-46204600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr17:46192000-46201000	Strong transcription	Left Ventricle	heart
25	chr17:46192000-46201200	Strong transcription	Placenta	Placenta
26	chr17:46192200-46199200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr17:46192200-46200200	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr17:46192200-46201200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr17:46192200-46201600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr17:46192200-46202400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr17:46192400-46200000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr17:46192400-46200600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr17:46192400-46200800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr17:46192400-46201000	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr17:46192400-46201000	Strong transcription	Thymus	Thymus
36	chr17:46192400-46201200	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr17:46192400-46201200	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr17:46192400-46201200	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr17:46192400-46201400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr17:46192400-46201400	Strong transcription	Fetal Thymus	thymus
41	chr17:46192400-46201600	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr17:46192400-46201600	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr17:46192400-46204800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr17:46192400-46205400	Strong transcription	Primary B cells from peripheral blood	blood
45	chr17:46192600-46200600	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr17:46192600-46200600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr17:46192600-46200800	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr17:46192800-46200800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr17:46192800-46205600	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr17:46193000-46200800	Strong transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links