Variant report

Variant	rs7217496
Chromosome Location	chr17:46154202-46154203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46124283..46126892-chr17:46151852..46155065,3	K562	blood:
2	chr17:46143868..46147268-chr17:46149730..46155245,6	K562	blood:
3	chr17:46152778..46154641-chr17:46183608..46186327,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082641	Chromatin interaction
ENSG00000002919	Chromatin interaction
ENSG00000263412	Chromatin interaction

Extended variants
information (count: 133 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs1010228	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1010230	0.83[ASN][1000 genomes]
rs10853094	0.85[EUR][1000 genomes]
rs11079806	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11079808	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11079809	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11649919	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651097	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655407	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11658242	0.81[MKK][hapmap]
rs11869625	0.83[AMR][1000 genomes]
rs12450620	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12600980	0.91[ASN][1000 genomes]
rs12936731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12939514	0.82[ASN][1000 genomes]
rs12941295	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12943543	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12946143	1.00[ASN][1000 genomes]
rs12947089	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs12949879	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12950213	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12950402	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12952163	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1316657	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1452663	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs1452665	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs1452666	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1452667	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1468270	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16951519	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16953941	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs16954268	1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[JPT][hapmap]
rs16954324	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs17620033	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1860862	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1860866	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1979897	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2021752	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2041572	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs2051821	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060876	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs208005	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs208008	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs208009	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs208015	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs2109982	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2109983	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2109984	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2123341	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2229369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2240120	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs2240121	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2240122	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2278868	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2285863	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2305433	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2325783	1.00[ASN][1000 genomes]
rs2325804	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs35361214	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35688835	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3744346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3744347	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3785737	0.87[ASN][1000 genomes]
rs3792692	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs3792694	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs3805370	0.84[CHB][hapmap]
rs3897986	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs4793779	0.83[CHB][hapmap]
rs4794441	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4794447	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4794448	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4794449	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4794450	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4794451	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4794453	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4995899	1.00[ASN][1000 genomes]
rs55920502	1.00[ASN][1000 genomes]
rs58203448	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58595405	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58624511	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62064953	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6504024	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504031	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6504032	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6504108	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs6847	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71356520	0.81[ASN][1000 genomes]
rs71369829	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7209585	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7209730	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7212202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7213339	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7218700	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7220520	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7220768	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7221441	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7222136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7222646	0.87[MKK][hapmap]
rs7223867	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs7224014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224461	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7225550	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs741058	0.83[ASN][1000 genomes]
rs758999	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs8065670	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8065993	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8066049	0.84[ASN][1000 genomes]
rs8066391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8069263	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs8069889	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8071199	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs8071879	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs8072282	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs8075500	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8076380	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8077860	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8078125	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080662	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs875065	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs875066	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9747001	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs978263	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9807087	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9890691	0.91[ASN][1000 genomes]
rs9899275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9899461	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9905800	0.81[MKK][hapmap]
rs9910516	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469808	chr17:46049868-46228673	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv482897	chr17:46049868-46228673	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	esv1804681	chr17:46144628-46168544	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv908576	chr17:46147807-46260366	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs7217496	SNX11	cis	Skin Sun Exposed Lower leg	GTEx
rs7217496	SNX11	cis	Whole Blood	GTEx
rs7217496	PNPO	Cis_1M	lymphoblastoid	RTeQTL
rs7217496	SNX11	cis	cerebellum	SCAN
rs7217496	DCAKD	cis	cerebellum	SCAN
rs7217496	TUBG1	cis	parietal	SCAN
rs7217496	CBX1	cis	cerebellum	SCAN
rs7217496	KAT2A	cis	parietal	SCAN
rs7217496	RPL27	cis	cerebellum	SCAN
rs7217496	SNX11	cis	multi-tissue	Pritchard
rs7217496	NFE2L1	cis	cerebellum	SCAN
rs7217496	RUNDC1	cis	cerebellum	SCAN
rs7217496	SNX11	cis	lymphoblastoid	seeQTL
rs7217496	SNX11	cis	Lymphoblastoid	GTEx
rs7217496	SNX11	cis	parietal	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46130400-46154600	Strong transcription	Primary T cells from cord blood	blood
2	chr17:46131400-46154400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr17:46131400-46154400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr17:46132600-46155200	Strong transcription	Fetal Thymus	thymus
5	chr17:46133000-46154600	Strong transcription	Fetal Brain Female	brain
6	chr17:46133000-46155200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr17:46133200-46157200	Strong transcription	Fetal Stomach	stomach
8	chr17:46133400-46154400	Strong transcription	Brain Germinal Matrix	brain
9	chr17:46133400-46154400	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr17:46133400-46154600	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr17:46133400-46155200	Strong transcription	Dnd41	blood
12	chr17:46133600-46154400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr17:46133600-46154400	Strong transcription	Duodenum Smooth Muscle	Duodenum
14	chr17:46133600-46154600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr17:46134400-46154400	Strong transcription	Primary B cells from peripheral blood	blood
16	chr17:46135400-46155400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr17:46137400-46155200	Strong transcription	Fetal Muscle Trunk	muscle
18	chr17:46137800-46154600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr17:46138000-46154400	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr17:46139200-46162600	Weak transcription	Small Intestine	intestine
21	chr17:46139800-46162600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr17:46139800-46163600	Weak transcription	Esophagus	oesophagus
23	chr17:46140000-46162400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr17:46140200-46156400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr17:46140800-46163200	Weak transcription	Colonic Mucosa	Colon
26	chr17:46142200-46154400	Strong transcription	Fetal Muscle Leg	muscle
27	chr17:46142600-46162600	Weak transcription	Fetal Heart	heart
28	chr17:46143600-46157400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr17:46143800-46154400	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr17:46143800-46163200	Weak transcription	Aorta	Aorta
31	chr17:46144200-46154400	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr17:46144200-46157000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr17:46144400-46154400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr17:46144400-46154400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr17:46144400-46154600	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr17:46144400-46163000	Weak transcription	Psoas Muscle	Psoas
37	chr17:46144600-46154400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr17:46144600-46154400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr17:46144600-46154600	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr17:46144600-46154600	Strong transcription	Fetal Lung	lung
41	chr17:46144800-46177800	Weak transcription	Right Ventricle	heart
42	chr17:46145000-46154600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr17:46145800-46154400	Strong transcription	Placenta	Placenta
44	chr17:46145800-46154400	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr17:46145800-46154400	Strong transcription	HUVEC	blood vessel
46	chr17:46145800-46154600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr17:46145800-46155200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr17:46146000-46154400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr17:46146400-46154600	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr17:46146400-46154600	Strong transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links