The 2.0 version of rSNPBase

Variant report

Variant rs55920502
Chromosome Location chr17:46146505-46146506
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:46130400-46154600 Strong transcription Primary T cells from cord blood blood
2 chr17:46130600-46149800 Strong transcription Primary T regulatory cells fromperipheralblood blood
3 chr17:46131200-46154200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
4 chr17:46131400-46151000 Strong transcription Thymus Thymus
5 chr17:46131400-46154400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
6 chr17:46131400-46154400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
7 chr17:46132600-46148000 Strong transcription Primary hematopoietic stem cells blood
8 chr17:46132600-46155200 Strong transcription Fetal Thymus thymus
9 chr17:46133000-46154600 Strong transcription Fetal Brain Female brain
10 chr17:46133000-46155200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
11 chr17:46133200-46149400 Strong transcription Primary T cells fromperipheralblood blood
12 chr17:46133200-46157200 Strong transcription Fetal Stomach stomach
13 chr17:46133400-46149800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
14 chr17:46133400-46150600 Strong transcription Primary T helper cells fromperipheralblood blood
15 chr17:46133400-46151000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
16 chr17:46133400-46154400 Strong transcription Brain Germinal Matrix brain
17 chr17:46133400-46154400 Strong transcription Rectal Mucosa Donor 29 rectum
18 chr17:46133400-46154600 Strong transcription Primary T helper cells PMA-I stimulated --
19 chr17:46133400-46155200 Strong transcription Dnd41 blood
20 chr17:46133600-46149400 Strong transcription Duodenum Mucosa Duodenum
21 chr17:46133600-46151400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
22 chr17:46133600-46154400 Strong transcription Primary neutrophils fromperipheralblood blood
23 chr17:46133600-46154400 Strong transcription Duodenum Smooth Muscle Duodenum
24 chr17:46133600-46154600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr17:46134000-46146600 Strong transcription Primary B cells from cord blood blood
26 chr17:46134000-46154200 Strong transcription Stomach Smooth Muscle stomach
27 chr17:46134400-46154400 Strong transcription Primary B cells from peripheral blood blood
28 chr17:46135400-46155400 Weak transcription ES-WA7 Cell Line embryonic stem cell
29 chr17:46137400-46155200 Strong transcription Fetal Muscle Trunk muscle
30 chr17:46137800-46151600 Weak transcription Stomach Mucosa stomach
31 chr17:46137800-46154600 Strong transcription Monocytes-CD14+_RO01746 blood
32 chr17:46138000-46154400 Strong transcription Primary monocytes fromperipheralblood blood
33 chr17:46139200-46147200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr17:46139200-46162600 Weak transcription Small Intestine intestine
35 chr17:46139800-46162600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
36 chr17:46139800-46163600 Weak transcription Esophagus oesophagus
37 chr17:46140000-46153800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
38 chr17:46140000-46162400 Weak transcription Pancreatic Islets Pancreatic Islet
39 chr17:46140200-46156400 Weak transcription Primary T killer naive cells fromperipheralblood blood
40 chr17:46140800-46163200 Weak transcription Colonic Mucosa Colon
41 chr17:46141800-46148600 Weak transcription Pancreas Pancrea
42 chr17:46142200-46146600 Genic enhancers Muscle Satellite Cultured Cells --
43 chr17:46142200-46149200 Strong transcription Left Ventricle heart
44 chr17:46142200-46154400 Strong transcription Fetal Muscle Leg muscle
45 chr17:46142400-46147200 Weak transcription Primary T killer memory cells from peripheral blood blood
46 chr17:46142400-46148800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr17:46142400-46153600 Weak transcription Gastric stomach
48 chr17:46142600-46148200 Enhancers Adipose Nuclei Adipose
49 chr17:46142600-46153400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
50 chr17:46142600-46162600 Weak transcription Fetal Heart heart

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Last update: Aug 31, 2015