The 2.0 version of rSNPBase

Variant report

Variant rs1295647
Chromosome Location chr1:227060676-227060677
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227059000-227061800 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr1:227059000-227066800 Weak transcription Aorta Aorta
3 chr1:227059200-227061000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
4 chr1:227059200-227063600 Weak transcription Placenta Amnion Placenta Amnion
5 chr1:227059200-227069000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr1:227059400-227063400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
7 chr1:227059400-227063400 Weak transcription NH-A brain
8 chr1:227059400-227069600 Weak transcription Primary B cells from cord blood blood
9 chr1:227059600-227063200 Weak transcription NHEK skin
10 chr1:227059600-227066000 Weak transcription Cortex derived primary cultured neurospheres brain
11 chr1:227059600-227068400 Weak transcription Brain Hippocampus Middle brain
12 chr1:227059600-227069200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
13 chr1:227059600-227070200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr1:227059800-227061400 Weak transcription HUES6 Cell Line embryonic stem cell
15 chr1:227059800-227061600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr1:227059800-227061600 Weak transcription H9 Cell Line embryonic stem cell
17 chr1:227059800-227062200 Weak transcription A549 lung
18 chr1:227059800-227062600 Weak transcription Fetal Intestine Small intestine
19 chr1:227059800-227062600 Weak transcription Right Ventricle heart
20 chr1:227059800-227063400 Weak transcription iPS-15b Cell Line embryonic stem cell
21 chr1:227059800-227063400 Weak transcription iPS-18 Cell Line embryonic stem cell
22 chr1:227059800-227063400 Weak transcription Rectal Mucosa Donor 31 rectum
23 chr1:227059800-227063600 Weak transcription Colonic Mucosa Colon
24 chr1:227059800-227064400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr1:227059800-227064400 Weak transcription Primary B cells from peripheral blood blood
26 chr1:227059800-227064600 Enhancers Fetal Adrenal Gland Adrenal Gland
27 chr1:227059800-227064600 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr1:227059800-227064600 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr1:227059800-227065000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr1:227059800-227067400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr1:227059800-227070200 Weak transcription Osteobl bone
32 chr1:227059800-227075600 Weak transcription Brain Substantia Nigra brain
33 chr1:227059800-227095000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr1:227060000-227060800 Active TSS Fetal Muscle Trunk muscle
35 chr1:227060000-227061600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
36 chr1:227060000-227061600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
37 chr1:227060000-227061600 Weak transcription Spleen Spleen
38 chr1:227060000-227061800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
39 chr1:227060000-227062000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
40 chr1:227060000-227063000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr1:227060000-227063200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr1:227060000-227063400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr1:227060000-227063400 Weak transcription Stomach Smooth Muscle stomach
44 chr1:227060000-227063800 Weak transcription Brain Anterior Caudate brain
45 chr1:227060000-227064600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
46 chr1:227060000-227064600 Weak transcription Brain Cingulate Gyrus brain
47 chr1:227060000-227064600 Weak transcription Brain Inferior Temporal Lobe brain
48 chr1:227060000-227065000 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr1:227060000-227065000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr1:227060000-227065000 Weak transcription HMEC breast

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Last update: Aug 31, 2015