The 2.0 version of rSNPBase

Variant report

Variant rs6426547
Chromosome Location chr1:227004367-227004368
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:226994800-227007000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:226995800-227009800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
3 chr1:227001400-227005000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
4 chr1:227001400-227005000 Enhancers HMEC breast
5 chr1:227001400-227005200 Enhancers NHLF lung
6 chr1:227001600-227005200 Enhancers NHDF-Ad bronchial
7 chr1:227001800-227004800 Enhancers Fetal Adrenal Gland Adrenal Gland
8 chr1:227001800-227005200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
9 chr1:227001800-227005200 Enhancers Placenta Amnion Placenta Amnion
10 chr1:227002000-227004800 Enhancers Placenta Placenta
11 chr1:227002000-227005000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr1:227002200-227005200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr1:227003200-227005400 Enhancers HUVEC blood vessel
14 chr1:227003200-227008000 Weak transcription Right Atrium heart
15 chr1:227003200-227008200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr1:227003400-227004600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr1:227003400-227004800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr1:227003400-227004800 Enhancers Hela-S3 cervix
19 chr1:227003400-227005000 Enhancers NHEK skin
20 chr1:227003400-227005200 Enhancers NH-A brain
21 chr1:227003400-227007600 Weak transcription Left Ventricle heart
22 chr1:227003400-227007800 Weak transcription Brain Substantia Nigra brain
23 chr1:227003400-227008000 Weak transcription Brain Hippocampus Middle brain
24 chr1:227003400-227008200 Weak transcription Colon Smooth Muscle Colon
25 chr1:227003400-227008200 Weak transcription Fetal Lung lung
26 chr1:227003400-227008200 Weak transcription Spleen Spleen
27 chr1:227003400-227008400 Weak transcription Rectal Smooth Muscle rectum
28 chr1:227003400-227008400 Weak transcription Osteobl bone
29 chr1:227003400-227008600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr1:227003400-227008600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr1:227003400-227008600 Weak transcription Brain Angular Gyrus brain
32 chr1:227003400-227008600 Weak transcription HSMM muscle
33 chr1:227003400-227008600 Weak transcription HSMMtube muscle
34 chr1:227003400-227008800 Weak transcription Muscle Satellite Cultured Cells --
35 chr1:227003400-227009200 Weak transcription Brain Inferior Temporal Lobe brain
36 chr1:227003400-227009200 Weak transcription Right Ventricle heart
37 chr1:227003400-227009400 Weak transcription Small Intestine intestine
38 chr1:227003400-227015000 Weak transcription Thymus Thymus
39 chr1:227003600-227004600 Weak transcription Fetal Muscle Leg muscle
40 chr1:227003600-227005600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr1:227003600-227007400 Weak transcription Lung lung
42 chr1:227003600-227008200 Weak transcription Stomach Smooth Muscle stomach
43 chr1:227003600-227008800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr1:227003600-227008800 Weak transcription Psoas Muscle Psoas
45 chr1:227003600-227009200 Weak transcription Fetal Muscle Trunk muscle
46 chr1:227003800-227004400 Weak transcription Fetal Stomach stomach
47 chr1:227004000-227005000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
48 chr1:227004000-227007000 Weak transcription Adipose Nuclei Adipose
49 chr1:227004000-227008200 Weak transcription Skeletal Muscle Male skeletal muscle
50 chr1:227004000-227008800 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015