The 2.0 version of rSNPBase

Variant report

Variant rs6688068
Chromosome Location chr1:227010730-227010731
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227003400-227015000 Weak transcription Thymus Thymus
2 chr1:227004200-227011400 Weak transcription Primary T helper cells PMA-I stimulated --
3 chr1:227006800-227010800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
4 chr1:227007200-227011600 Enhancers Fetal Stomach stomach
5 chr1:227007400-227012000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr1:227008000-227010800 Enhancers Brain Hippocampus Middle brain
7 chr1:227008200-227011600 Enhancers Colon Smooth Muscle Colon
8 chr1:227008400-227011000 Enhancers Rectal Smooth Muscle rectum
9 chr1:227009400-227015200 Weak transcription NHEK skin
10 chr1:227009600-227011600 Weak transcription Spleen Spleen
11 chr1:227009600-227014800 Weak transcription Fetal Kidney kidney
12 chr1:227009800-227012800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
13 chr1:227009800-227014600 Weak transcription Rectal Mucosa Donor 31 rectum
14 chr1:227009800-227015200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr1:227009800-227015200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr1:227009800-227015200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr1:227009800-227015600 Weak transcription Osteobl bone
18 chr1:227010000-227010800 Enhancers Stomach Smooth Muscle stomach
19 chr1:227010000-227011400 Weak transcription Brain Cingulate Gyrus brain
20 chr1:227010000-227011600 Weak transcription Brain Inferior Temporal Lobe brain
21 chr1:227010000-227011600 Weak transcription GM12878-XiMat blood
22 chr1:227010000-227011800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr1:227010000-227012000 Weak transcription Brain Angular Gyrus brain
24 chr1:227010000-227014600 Weak transcription Adipose Nuclei Adipose
25 chr1:227010000-227014600 Weak transcription Colonic Mucosa Colon
26 chr1:227010000-227014800 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr1:227010000-227015000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr1:227010000-227015200 Weak transcription Duodenum Mucosa Duodenum
29 chr1:227010000-227015200 Weak transcription Esophagus oesophagus
30 chr1:227010000-227015200 Weak transcription Right Ventricle heart
31 chr1:227010000-227015200 Weak transcription HSMM muscle
32 chr1:227010000-227015200 Weak transcription HUVEC blood vessel
33 chr1:227010000-227015600 Weak transcription Left Ventricle heart
34 chr1:227010200-227011200 Weak transcription Brain Substantia Nigra brain
35 chr1:227010200-227011400 Weak transcription Fetal Thymus thymus
36 chr1:227010200-227013200 Weak transcription Fetal Muscle Trunk muscle
37 chr1:227010200-227013600 Weak transcription Placenta Placenta
38 chr1:227010200-227014800 Weak transcription Skeletal Muscle Female skeletal muscle
39 chr1:227010200-227014800 Weak transcription NHDF-Ad bronchial
40 chr1:227010200-227015200 Weak transcription Fetal Lung lung
41 chr1:227010200-227015200 Weak transcription Placenta Amnion Placenta Amnion
42 chr1:227010200-227015200 Weak transcription Right Atrium heart
43 chr1:227010600-227011600 Weak transcription Brain Anterior Caudate brain
44 chr1:227010600-227013200 Weak transcription Fetal Muscle Leg muscle
45 chr1:227010600-227014800 Weak transcription Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015