Variant report

Variant	rs6426541
Chromosome Location	chr1:226990261-226990262
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:226989096..226991655-chr1:226992753..226994934,2	MCF-7	breast:
2	chr1:226984451..226988514-chr1:226988953..226993290,5	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1046240	0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs1150897	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1150900	0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11802358	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs12086302	0.83[ASN][1000 genomes]
rs12738352	0.89[CEU][hapmap]
rs1295638	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1295640	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1295641	0.83[ASN][1000 genomes]
rs1295643	0.83[ASN][1000 genomes]
rs2073489	0.90[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2236914	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs2236915	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs2793461	0.83[ASN][1000 genomes]
rs2802268	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs4653470	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs6426547	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6426548	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6674701	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6688068	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6692729	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6697001	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6697431	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6759	0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7514364	0.88[ASN][1000 genomes]
rs7518926	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7530245	0.85[ASN][1000 genomes]
rs7530370	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7547071	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226987200-227001400	Weak transcription	Right Atrium	heart
2	chr1:226987400-226991400	Weak transcription	Lung	lung
3	chr1:226987400-226992000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:226987400-226997400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:226988600-226990800	Weak transcription	Thymus	Thymus
6	chr1:226988600-226992800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr1:226989400-227002800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:226989600-226994200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr1:226989800-226991400	Weak transcription	K562	blood
10	chr1:226990000-226992600	Weak transcription	Primary T cells from cord blood	blood
11	chr1:226990000-226995000	Enhancers	Fetal Thymus	thymus

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