Variant report

Variant	rs13003009
Chromosome Location	chr2:63784379-63784380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10200146	0.82[AFR][1000 genomes]
rs1109963	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11684093	0.87[ASN][1000 genomes]
rs11684973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11688997	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11694619	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11695078	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11896820	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13013630	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13013890	0.85[ASN][1000 genomes]
rs13015987	0.91[ASN][1000 genomes]
rs13025357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446568	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2166496	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2166498	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33977056	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34763417	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36116244	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66873455	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67037366	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6710451	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724115	0.82[EUR][1000 genomes]
rs67257875	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67356044	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751759	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67696856	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67752811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67987962	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72821619	0.87[ASN][1000 genomes]
rs7591566	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63772800-63788800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:63777400-63806800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:63777600-63784400	Weak transcription	Gastric	stomach
4	chr2:63778800-63794000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:63780200-63786000	Weak transcription	Fetal Lung	lung
6	chr2:63780200-63814800	Weak transcription	Psoas Muscle	Psoas
7	chr2:63780400-63785800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr2:63780600-63785800	Weak transcription	Adipose Nuclei	Adipose
9	chr2:63780800-63785000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:63780800-63791800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:63780800-63792200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr2:63781000-63793200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:63781000-63804000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:63781200-63790000	Weak transcription	Right Ventricle	heart
15	chr2:63781600-63785600	Weak transcription	Brain Anterior Caudate	brain
16	chr2:63781600-63786600	Weak transcription	Brain Angular Gyrus	brain
17	chr2:63781800-63784600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:63781800-63787000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:63782600-63793400	Weak transcription	Lung	lung
20	chr2:63783000-63784400	Weak transcription	Fetal Intestine Small	intestine
21	chr2:63783000-63785600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr2:63783000-63789000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:63783200-63785200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr2:63783400-63788800	Weak transcription	Primary T cells from cord blood	blood
25	chr2:63783400-63798600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr2:63783600-63790600	Weak transcription	Liver	Liver
27	chr2:63783600-63793800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr2:63783800-63787200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr2:63783800-63788800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr2:63783800-63790000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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