Variant report

Variant	rs2166498
Chromosome Location	chr2:63693621-63693622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10200146	0.89[YRI][hapmap]
rs1109963	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11683229	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11684093	0.83[ASN][1000 genomes]
rs11684973	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11688997	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11694619	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11695078	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11896820	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13003009	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13013630	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13013890	0.92[CHB][hapmap];0.89[ASN][1000 genomes]
rs13015987	0.96[ASN][1000 genomes]
rs13021852	0.84[CEU][hapmap];0.91[CHB][hapmap]
rs13025357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1446568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949411	0.92[CHB][hapmap]
rs2166496	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs33977056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34763417	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36116244	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66873455	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67037366	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6704998	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6710451	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6724115	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67257875	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67356044	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6751759	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67696856	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67752811	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67987962	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72821619	0.91[ASN][1000 genomes]
rs7591566	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv874235	chr2:63622470-63709708	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63662000-63698000	Weak transcription	Ovary	ovary
2	chr2:63666600-63726800	Weak transcription	Gastric	stomach
3	chr2:63673600-63697800	Weak transcription	Left Ventricle	heart
4	chr2:63675800-63712000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:63680400-63698400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:63680600-63705800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr2:63681600-63717800	Weak transcription	Aorta	Aorta
8	chr2:63682400-63717600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:63683400-63712800	Weak transcription	Fetal Thymus	thymus
10	chr2:63684600-63698800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr2:63684800-63695400	Weak transcription	Brain Substantia Nigra	brain
12	chr2:63686000-63704600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr2:63686200-63698400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr2:63686600-63706800	Weak transcription	Colon Smooth Muscle	Colon
15	chr2:63687400-63701000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr2:63687600-63713200	Weak transcription	Fetal Kidney	kidney
17	chr2:63688600-63696400	Weak transcription	Fetal Stomach	stomach
18	chr2:63688600-63704600	Weak transcription	Right Ventricle	heart
19	chr2:63688600-63705000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:63688600-63727800	Weak transcription	Primary B cells from cord blood	blood
21	chr2:63688800-63700600	Weak transcription	Brain Hippocampus Middle	brain
22	chr2:63688800-63701800	Weak transcription	Fetal Lung	lung
23	chr2:63688800-63711000	Weak transcription	Brain Anterior Caudate	brain
24	chr2:63688800-63723000	Weak transcription	Liver	Liver
25	chr2:63689000-63700600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr2:63689000-63712000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr2:63689800-63695000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr2:63690200-63699800	Weak transcription	Fetal Muscle Leg	muscle
29	chr2:63690200-63713600	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr2:63690400-63704800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr2:63690600-63704600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr2:63690600-63733000	Weak transcription	Dnd41	blood
33	chr2:63691000-63724400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr2:63691200-63697000	Weak transcription	Primary T cells from cord blood	blood
35	chr2:63691400-63728000	Weak transcription	Primary hematopoietic stem cells	blood
36	chr2:63691600-63697200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr2:63691600-63719800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr2:63692000-63694600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr2:63692000-63694800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr2:63692000-63696000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr2:63692000-63697200	Weak transcription	Adipose Nuclei	Adipose

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