Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10203397	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1035250	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10930459	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11674962	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11687843	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11887508	0.87[EUR][1000 genomes]
rs11893921	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11893993	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12473405	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12614003	0.85[EUR][1000 genomes]
rs17283355	0.85[EUR][1000 genomes]
rs4667676	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4667678	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4668373	0.85[EUR][1000 genomes]
rs4668374	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4668375	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6433284	0.82[AFR][1000 genomes]
rs6713640	0.83[EUR][1000 genomes]
rs6724085	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6737873	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172083400-172086000	Weak transcription	HSMMtube	muscle
2	chr2:172083400-172086200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:172083600-172086200	Enhancers	Placenta	Placenta
4	chr2:172084000-172085200	Weak transcription	HMEC	breast
5	chr2:172084000-172086200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:172084400-172085400	Weak transcription	NHEK	skin
7	chr2:172084400-172091800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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