Variant report

Variant	rs11887508
Chromosome Location	chr2:172085319-172085320
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10203397	0.91[EUR][1000 genomes]
rs1035250	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs10930459	0.88[EUR][1000 genomes]
rs11674962	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs11687843	0.88[EUR][1000 genomes]
rs11887065	0.80[EUR][1000 genomes]
rs12614003	0.92[EUR][1000 genomes]
rs13004356	0.87[EUR][1000 genomes]
rs17283355	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4667676	0.88[EUR][1000 genomes]
rs4667678	0.88[EUR][1000 genomes]
rs4668372	0.80[EUR][1000 genomes]
rs4668373	0.92[EUR][1000 genomes]
rs60254168	0.83[EUR][1000 genomes]
rs6737873	0.84[EUR][1000 genomes]
rs7568175	0.95[YRI][hapmap];0.80[EUR][1000 genomes]
rs7582508	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172083400-172086000	Weak transcription	HSMMtube	muscle
2	chr2:172083400-172086200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:172083600-172086200	Enhancers	Placenta	Placenta
4	chr2:172084000-172086200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:172084400-172085400	Weak transcription	NHEK	skin
6	chr2:172084400-172091800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:172085200-172086000	Enhancers	GM12878-XiMat	blood
8	chr2:172085200-172086600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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