Variant report

Variant	rs7568175
Chromosome Location	chr2:172066068-172066069
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1035250	0.96[TSI][hapmap]
rs11674962	0.83[TSI][hapmap]
rs11887065	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11887508	0.80[EUR][1000 genomes]
rs11893921	0.84[EUR][1000 genomes]
rs11893993	0.81[EUR][1000 genomes]
rs12473405	0.81[EUR][1000 genomes]
rs12614003	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17283355	0.89[ASW][hapmap];0.82[CEU][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap]
rs4668372	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4668373	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4668374	0.88[EUR][1000 genomes]
rs4668375	0.82[EUR][1000 genomes]
rs60254168	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6433284	0.84[EUR][1000 genomes]
rs6713640	0.87[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs6724085	0.87[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs6737873	0.80[EUR][1000 genomes]
rs7582508	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv979348	chr2:172057884-172068984	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172054600-172066200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:172064800-172067400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:172065000-172067200	Enhancers	K562	blood
4	chr2:172065400-172066800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:172065600-172066400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:172065600-172066400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:172065600-172066600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr2:172065600-172066800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:172065600-172066800	Weak transcription	Primary B cells from cord blood	blood
10	chr2:172065600-172066800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr2:172065600-172067000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr2:172065600-172067000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr2:172065600-172068800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr2:172065600-172069200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:172065800-172066800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr2:172065800-172067000	Weak transcription	Dnd41	blood
17	chr2:172065800-172067000	Weak transcription	GM12878-XiMat	blood
18	chr2:172065800-172067200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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