Variant report

Variant	rs11887065
Chromosome Location	chr2:172067402-172067403
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172009844..172011801-chr2:172066208..172069012,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11887508	0.80[EUR][1000 genomes]
rs11893921	0.84[EUR][1000 genomes]
rs11893993	0.81[EUR][1000 genomes]
rs12473405	0.81[EUR][1000 genomes]
rs12614003	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4668372	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4668373	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4668374	0.88[EUR][1000 genomes]
rs4668375	0.82[EUR][1000 genomes]
rs60254168	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6433284	0.84[EUR][1000 genomes]
rs6713640	0.90[EUR][1000 genomes]
rs6724085	0.81[EUR][1000 genomes]
rs6737873	0.80[EUR][1000 genomes]
rs7568175	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7582508	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv979348	chr2:172057884-172068984	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172065600-172068800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr2:172065600-172069200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:172066200-172067800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:172066400-172067800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:172066400-172067800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:172066400-172068200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr2:172066800-172067600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr2:172066800-172067600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr2:172066800-172067600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr2:172066800-172067600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr2:172066800-172067600	Enhancers	Fetal Thymus	thymus
12	chr2:172066800-172067800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr2:172066800-172068000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr2:172067000-172067600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr2:172067000-172067600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr2:172067000-172068000	Flanking Active TSS	GM12878-XiMat	blood
17	chr2:172067000-172068200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr2:172067000-172068200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr2:172067000-172070000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr2:172067200-172067600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
21	chr2:172067200-172067600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr2:172067200-172067600	Enhancers	Stomach Smooth Muscle	stomach
23	chr2:172067200-172067600	Flanking Active TSS	K562	blood
24	chr2:172067200-172067800	Enhancers	Colon Smooth Muscle	Colon
25	chr2:172067200-172067800	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr2:172067200-172068000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr2:172067200-172068200	Flanking Active TSS	Primary T cells from cord blood	blood
28	chr2:172067200-172068200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
29	chr2:172067200-172068200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
30	chr2:172067200-172068200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
31	chr2:172067400-172067600	Enhancers	Primary hematopoietic stem cells	blood
32	chr2:172067400-172067600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr2:172067400-172067600	Flanking Active TSS	Rectal Smooth Muscle	rectum
34	chr2:172067400-172067800	Flanking Active TSS	Primary B cells from cord blood	blood
35	chr2:172067400-172067800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr2:172067400-172067800	Active TSS	Duodenum Mucosa	Duodenum
37	chr2:172067400-172068000	Flanking Active TSS	Primary B cells from peripheral blood	blood
38	chr2:172067400-172068000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr2:172067400-172068000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr2:172067400-172068000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
41	chr2:172067400-172068000	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr2:172067400-172068000	Flanking Active TSS	Thymus	Thymus
43	chr2:172067400-172068200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr2:172067400-172068200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr2:172067400-172068200	Flanking Active TSS	Dnd41	blood
46	chr2:172067400-172068400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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