Variant report

Variant	rs4668374
Chromosome Location	chr2:172069491-172069492
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10203397	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1035250	0.88[ASW][hapmap];0.81[LWK][hapmap];0.90[MEX][hapmap];0.96[MKK][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10930459	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11674962	0.82[ASW][hapmap];0.87[GIH][hapmap];0.83[LWK][hapmap];0.90[MEX][hapmap];0.93[MKK][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11687843	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11887065	0.88[EUR][1000 genomes]
rs11893921	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11893993	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12473405	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13004356	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17283355	0.89[TSI][hapmap]
rs4667676	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4667678	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4668372	0.88[EUR][1000 genomes]
rs4668375	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60254168	0.85[EUR][1000 genomes]
rs6433284	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6713640	0.88[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];0.90[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6724085	0.94[CEU][hapmap];0.90[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6737873	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7568175	0.82[CEU][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs7582508	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172067000-172070000	Enhancers	H1 Cell Line	embryonic stem cell
2	chr2:172067600-172071200	Enhancers	K562	blood
3	chr2:172067800-172070800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:172067800-172071000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:172067800-172073400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:172068000-172070800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:172068600-172069600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:172068600-172069600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr2:172069200-172069800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:172069400-172070800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr2:172069400-172071000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr2:172069400-172071400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr2:172069400-172073200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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