Variant report

Variant	rs1035250
Chromosome Location	chr2:172069140-172069141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172067798..172069375-chr2:172288988..172290939,2	K562	blood:

Variant related genes	Relation type
ENSG00000115827	Chromatin interaction
ENSG00000123600	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10203397	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10930459	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11674962	0.82[ASW][hapmap];1.00[CEU][hapmap];0.89[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.86[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11687843	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11887508	0.86[EUR][1000 genomes]
rs11893921	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11893993	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12473405	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12614003	0.89[EUR][1000 genomes]
rs13004356	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17283355	0.89[CEU][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs4667676	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4667678	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4668373	0.89[EUR][1000 genomes]
rs4668374	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4668375	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6433284	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6713640	1.00[ASW][hapmap];0.83[CEU][hapmap];0.84[LWK][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap];0.96[TSI][hapmap];0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6724085	0.83[ASW][hapmap];0.83[CEU][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6737873	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7568175	0.96[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172065600-172069200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:172067000-172070000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr2:172067600-172071200	Enhancers	K562	blood
4	chr2:172067800-172069200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:172067800-172070800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:172067800-172071000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:172067800-172073400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:172068000-172070800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:172068200-172069200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:172068200-172069200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr2:172068200-172069200	Enhancers	Dnd41	blood
12	chr2:172068600-172069400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:172068600-172069400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr2:172068600-172069600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr2:172068600-172069600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr2:172068800-172069400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr2:172068800-172069400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr2:172069000-172069200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr2:172069000-172069400	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links