Variant report

Variant	rs7582508
Chromosome Location	chr2:172075487-172075488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11887065	0.96[EUR][1000 genomes]
rs11887508	0.83[EUR][1000 genomes]
rs11893921	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11893993	0.85[EUR][1000 genomes]
rs12473405	0.85[EUR][1000 genomes]
rs12614003	0.84[EUR][1000 genomes]
rs17283355	0.82[EUR][1000 genomes]
rs4668372	0.96[EUR][1000 genomes]
rs4668373	0.84[EUR][1000 genomes]
rs4668374	0.87[EUR][1000 genomes]
rs4668375	0.86[EUR][1000 genomes]
rs60254168	0.94[EUR][1000 genomes]
rs6433284	0.82[EUR][1000 genomes]
rs6713640	0.88[EUR][1000 genomes]
rs6724085	0.85[EUR][1000 genomes]
rs7568175	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172073600-172081600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:172074800-172076000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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