Variant report

Variant	rs13013041
Chromosome Location	chr2:33828009-33828010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33822942..33826673-chr2:33827306..33831719,4	MCF-7	breast:
2	chr2:33822916..33825933-chr2:33827272..33830104,3	K562	blood:

Variant related genes	Relation type
ENSG00000119812	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11884952	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12712342	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12990303	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2887089	1.00[ASN][1000 genomes]
rs34321218	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34482270	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35630933	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6543734	1.00[ASN][1000 genomes]
rs6724572	1.00[ASN][1000 genomes]
rs6740009	1.00[ASN][1000 genomes]
rs72787819	1.00[ASN][1000 genomes]
rs72787820	1.00[ASN][1000 genomes]
rs72787830	1.00[ASN][1000 genomes]
rs7559158	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825000-33828400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:33825000-33829800	Weak transcription	Left Ventricle	heart
3	chr2:33825000-33830200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:33825000-33830200	Weak transcription	Esophagus	oesophagus
5	chr2:33825200-33829800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:33825200-33829800	Weak transcription	Placenta	Placenta
7	chr2:33825200-33830000	Weak transcription	Fetal Kidney	kidney
8	chr2:33825200-33830200	Weak transcription	Adipose Nuclei	Adipose
9	chr2:33825200-33830200	Weak transcription	NHEK	skin
10	chr2:33825200-33831200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:33825200-33832200	Weak transcription	Fetal Heart	heart
12	chr2:33825200-33832200	Weak transcription	Psoas Muscle	Psoas
13	chr2:33825200-33837000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:33825400-33830200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr2:33825400-33833000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr2:33826600-33829200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr2:33826800-33828400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr2:33827000-33828600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr2:33827000-33830800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr2:33827000-33830800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr2:33827200-33828400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr2:33827200-33830600	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr2:33827400-33828400	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr2:33827400-33830000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr2:33827400-33832200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr2:33827600-33828200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr2:33827800-33828200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr2:33827800-33828600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr2:33828000-33832000	Weak transcription	Ovary	ovary

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