Variant report

Variant	rs72787830
Chromosome Location	chr2:33859185-33859186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11884952	1.00[ASN][1000 genomes]
rs12712342	1.00[ASN][1000 genomes]
rs12990303	1.00[ASN][1000 genomes]
rs13013041	1.00[ASN][1000 genomes]
rs2887089	1.00[ASN][1000 genomes]
rs34321218	1.00[ASN][1000 genomes]
rs34482270	1.00[ASN][1000 genomes]
rs35630933	1.00[ASN][1000 genomes]
rs6543734	1.00[ASN][1000 genomes]
rs6724572	1.00[ASN][1000 genomes]
rs6740009	1.00[ASN][1000 genomes]
rs72785968	1.00[AFR][1000 genomes]
rs72787819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7559158	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33845200-33859400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:33845200-33859600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:33855200-33859600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:33858200-33859600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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