Variant report

Variant	rs7559158
Chromosome Location	chr2:33836922-33836923
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11884952	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12712342	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12990303	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13013041	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13028004	0.83[ASW][hapmap]
rs2887089	1.00[ASN][1000 genomes]
rs34321218	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34482270	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35630933	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6543734	1.00[ASN][1000 genomes]
rs6724572	1.00[ASN][1000 genomes]
rs6740009	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap];1.00[ASN][1000 genomes]
rs72787819	1.00[ASN][1000 genomes]
rs72787820	1.00[ASN][1000 genomes]
rs72787830	1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825200-33837000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:33833800-33845200	Weak transcription	Left Ventricle	heart
4	chr2:33834000-33837400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr2:33834200-33846600	Weak transcription	Psoas Muscle	Psoas
6	chr2:33834600-33837000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr2:33834800-33837000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
8	chr2:33834800-33837400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:33835000-33837200	ZNF genes & repeats	Placenta	Placenta
10	chr2:33835400-33837200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:33835800-33838400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr2:33836000-33838200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr2:33836800-33837200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
14	chr2:33836800-33838400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr2:33836800-33839600	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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