Variant report

Variant	rs13013677
Chromosome Location	chr2:179748641-179748642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10445768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930840	0.90[ASN][1000 genomes]
rs10930841	0.90[ASN][1000 genomes]
rs10930843	0.90[ASN][1000 genomes]
rs12988301	0.83[EUR][1000 genomes]
rs13006707	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13012900	0.90[ASN][1000 genomes]
rs13019119	0.90[ASN][1000 genomes]
rs13024947	0.90[ASN][1000 genomes]
rs13031826	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13033688	0.84[AMR][1000 genomes]
rs16866575	0.90[ASN][1000 genomes]
rs17453445	0.90[ASN][1000 genomes]
rs34415271	0.90[ASN][1000 genomes]
rs34817160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34883828	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs34940894	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs35288343	0.90[ASN][1000 genomes]
rs35443784	0.90[ASN][1000 genomes]
rs35596070	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs35759895	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35828982	1.00[ASN][1000 genomes]
rs36186285	0.90[ASN][1000 genomes]
rs55883940	0.90[ASN][1000 genomes]
rs56005624	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs62177349	0.90[ASN][1000 genomes]
rs62179078	0.80[ASN][1000 genomes]
rs62179084	0.90[ASN][1000 genomes]
rs72961273	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949133	chr2:179711376-180124327	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv875455	chr2:179732845-179909467	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179702200-179749200	Weak transcription	Thymus	Thymus
2	chr2:179710800-179782800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr2:179713400-179778600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr2:179717000-179790600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr2:179728200-179753800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr2:179729200-179749000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:179729400-179753600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:179730600-179749000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr2:179730800-179750600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr2:179730800-179756000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:179730800-179770800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr2:179733200-179779200	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr2:179733800-179754200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr2:179735400-179760800	Weak transcription	Right Ventricle	heart
15	chr2:179737200-179749000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr2:179739800-179755000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr2:179742600-179750400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr2:179743000-179750800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr2:179744600-179753600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr2:179745200-179749600	Strong transcription	Fetal Muscle Leg	muscle
21	chr2:179745400-179749000	Weak transcription	HSMMtube	muscle
22	chr2:179747000-179749600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr2:179747000-179753600	Strong transcription	Primary T cells from cord blood	blood
24	chr2:179747800-179748800	Enhancers	Adipose Nuclei	Adipose
25	chr2:179747800-179749400	Weak transcription	Psoas Muscle	Psoas
26	chr2:179747800-179750800	Weak transcription	Pancreas	Pancrea
27	chr2:179748000-179749400	Enhancers	HMEC	breast
28	chr2:179748000-179752400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr2:179748000-179754000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr2:179748000-179760800	Weak transcription	Right Atrium	heart
31	chr2:179748200-179749000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr2:179748400-179749800	Genic enhancers	Fetal Heart	heart
33	chr2:179748400-179756000	Weak transcription	Ovary	ovary
34	chr2:179748600-179749200	Weak transcription	Left Ventricle	heart
35	chr2:179748600-179750400	Weak transcription	HUVEC	blood vessel
36	chr2:179748600-179750800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr2:179748600-179750800	Weak transcription	Osteobl	bone
38	chr2:179748600-179761400	Weak transcription	Primary B cells from cord blood	blood

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