Variant report

Variant	rs34940894
Chromosome Location	chr2:179755937-179755938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:179745902..179747990-chr2:179754251..179756238,2	K562	blood:
2	chr2:179755889..179756631-chr2:179779117..179779892,4	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10445768	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10930840	0.90[ASN][1000 genomes]
rs10930841	0.90[ASN][1000 genomes]
rs10930843	0.90[ASN][1000 genomes]
rs13006707	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs13012900	0.90[ASN][1000 genomes]
rs13013677	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs13019119	0.90[ASN][1000 genomes]
rs13024947	0.90[ASN][1000 genomes]
rs13031826	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16866575	0.90[ASN][1000 genomes]
rs17453445	0.90[ASN][1000 genomes]
rs34415271	0.90[ASN][1000 genomes]
rs34817160	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs34883828	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35288343	0.90[ASN][1000 genomes]
rs35443784	0.90[ASN][1000 genomes]
rs35596070	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35828982	0.90[ASN][1000 genomes]
rs36186285	0.90[ASN][1000 genomes]
rs55883940	0.90[ASN][1000 genomes]
rs56005624	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177349	0.90[ASN][1000 genomes]
rs62179078	0.80[ASN][1000 genomes]
rs62179084	0.90[ASN][1000 genomes]
rs72961273	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949133	chr2:179711376-180124327	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv875455	chr2:179732845-179909467	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179710800-179782800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:179713400-179778600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr2:179717000-179790600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr2:179730800-179756000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr2:179730800-179770800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr2:179733200-179779200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr2:179735400-179760800	Weak transcription	Right Ventricle	heart
8	chr2:179748000-179760800	Weak transcription	Right Atrium	heart
9	chr2:179748400-179756000	Weak transcription	Ovary	ovary
10	chr2:179748600-179761400	Weak transcription	Primary B cells from cord blood	blood
11	chr2:179749400-179756400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr2:179749600-179772800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr2:179749800-179785200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr2:179751200-179775200	Weak transcription	Pancreas	Pancrea
15	chr2:179753200-179756000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:179753400-179756800	Weak transcription	HSMMtube	muscle
17	chr2:179753400-179760800	Weak transcription	Fetal Muscle Leg	muscle
18	chr2:179753600-179756400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr2:179753600-179759000	Weak transcription	Primary T cells from cord blood	blood
20	chr2:179753600-179768600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr2:179753600-179768600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr2:179754200-179756400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr2:179754800-179757800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:179755000-179761800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr2:179755400-179758600	Weak transcription	Psoas Muscle	Psoas
26	chr2:179755400-179758800	Enhancers	Fetal Heart	heart
27	chr2:179755600-179756000	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links