Variant report

Variant	rs13031826
Chromosome Location	chr2:179756602-179756603
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:179756153..179756818-chr2:179994138..179995053,3	MCF-7	breast:
2	chr2:179755889..179756631-chr2:179779117..179779892,4	MCF-7	breast:
3	chr2:179735407..179736123-chr2:179756219..179756764,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10445768	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10930840	0.82[ASN][1000 genomes]
rs10930841	0.82[ASN][1000 genomes]
rs10930843	0.82[ASN][1000 genomes]
rs13006707	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13012900	0.82[ASN][1000 genomes]
rs13013677	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13019119	0.82[ASN][1000 genomes]
rs13024947	0.82[ASN][1000 genomes]
rs16866575	0.82[ASN][1000 genomes]
rs17453445	0.82[ASN][1000 genomes]
rs34415271	0.82[ASN][1000 genomes]
rs34817160	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs34883828	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34940894	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35288343	0.82[ASN][1000 genomes]
rs35443784	0.82[ASN][1000 genomes]
rs35596070	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35828982	0.82[ASN][1000 genomes]
rs36186285	0.82[ASN][1000 genomes]
rs55883940	0.82[ASN][1000 genomes]
rs56005624	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62177349	0.82[ASN][1000 genomes]
rs62179084	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949133	chr2:179711376-180124327	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv875455	chr2:179732845-179909467	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179710800-179782800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:179713400-179778600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr2:179717000-179790600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr2:179730800-179770800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr2:179733200-179779200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr2:179735400-179760800	Weak transcription	Right Ventricle	heart
7	chr2:179748000-179760800	Weak transcription	Right Atrium	heart
8	chr2:179748600-179761400	Weak transcription	Primary B cells from cord blood	blood
9	chr2:179749600-179772800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr2:179749800-179785200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr2:179751200-179775200	Weak transcription	Pancreas	Pancrea
12	chr2:179753400-179756800	Weak transcription	HSMMtube	muscle
13	chr2:179753400-179760800	Weak transcription	Fetal Muscle Leg	muscle
14	chr2:179753600-179759000	Weak transcription	Primary T cells from cord blood	blood
15	chr2:179753600-179768600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr2:179753600-179768600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr2:179754800-179757800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:179755000-179761800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr2:179755400-179758600	Weak transcription	Psoas Muscle	Psoas
20	chr2:179755400-179758800	Enhancers	Fetal Heart	heart
21	chr2:179756000-179757000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr2:179756200-179756800	Enhancers	HSMM	muscle
23	chr2:179756200-179757000	Weak transcription	Ovary	ovary
24	chr2:179756200-179761000	Weak transcription	Left Ventricle	heart
25	chr2:179756400-179756800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:179756400-179756800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr2:179756400-179757000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr2:179756400-179759200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr2:179756600-179757200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr2:179756600-179757800	Enhancers	H1 Cell Line	embryonic stem cell

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