Variant report

Variant	rs34883828
Chromosome Location	chr2:179770175-179770176
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:179769183..179772111-chr2:179772237..179776036,4	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10445768	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10930840	0.90[ASN][1000 genomes]
rs10930841	0.90[ASN][1000 genomes]
rs10930843	0.90[ASN][1000 genomes]
rs13006707	0.90[ASN][1000 genomes]
rs13012900	0.90[ASN][1000 genomes]
rs13013677	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs13019119	0.90[ASN][1000 genomes]
rs13024947	0.90[ASN][1000 genomes]
rs13031826	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16866575	0.90[ASN][1000 genomes]
rs17453445	0.90[ASN][1000 genomes]
rs34415271	0.90[ASN][1000 genomes]
rs34817160	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs34940894	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35288343	0.90[ASN][1000 genomes]
rs35443784	0.90[ASN][1000 genomes]
rs35596070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35828982	0.90[ASN][1000 genomes]
rs36186285	0.90[ASN][1000 genomes]
rs55883940	0.90[ASN][1000 genomes]
rs56005624	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177349	0.90[ASN][1000 genomes]
rs62179078	0.80[ASN][1000 genomes]
rs62179084	0.90[ASN][1000 genomes]
rs72961273	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949133	chr2:179711376-180124327	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv875455	chr2:179732845-179909467	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv583756	chr2:179758007-179843612	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1000545	chr2:179768359-179843612	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179710800-179782800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:179713400-179778600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr2:179717000-179790600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr2:179730800-179770800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr2:179733200-179779200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr2:179749600-179772800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr2:179749800-179785200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr2:179751200-179775200	Weak transcription	Pancreas	Pancrea
9	chr2:179761200-179782800	Weak transcription	Right Ventricle	heart
10	chr2:179761800-179774800	Weak transcription	Fetal Muscle Leg	muscle
11	chr2:179762400-179774000	Weak transcription	Fetal Heart	heart
12	chr2:179763000-179775200	Weak transcription	Psoas Muscle	Psoas
13	chr2:179765800-179774200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr2:179768400-179770200	Strong transcription	Primary B cells from cord blood	blood
15	chr2:179768600-179772200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr2:179768600-179773000	Strong transcription	Primary T cells from cord blood	blood
17	chr2:179769200-179771400	Strong transcription	Left Ventricle	heart
18	chr2:179769600-179770200	Strong transcription	HSMMtube	muscle
19	chr2:179770000-179788600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:179770000-179848200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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