Variant report

Variant	rs13022271
Chromosome Location	chr2:37413242-37413243
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37402555..37406062-chr2:37411468..37414778,3	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10168505	0.95[ASN][1000 genomes]
rs10182091	0.82[ASN][1000 genomes]
rs10182759	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs10184179	0.81[JPT][hapmap]
rs10205526	0.82[ASN][1000 genomes]
rs10205833	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs10209193	0.82[ASN][1000 genomes]
rs10432634	0.83[JPT][hapmap]
rs10865122	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs11124565	0.86[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs11569755	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11686193	0.82[ASN][1000 genomes]
rs11885155	0.82[ASN][1000 genomes]
rs11885265	0.82[ASN][1000 genomes]
rs11895771	0.82[CHD][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs11895882	0.82[ASN][1000 genomes]
rs12988288	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12994806	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13008982	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13018873	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs13392521	0.82[ASN][1000 genomes]
rs13401374	0.82[ASN][1000 genomes]
rs2111630	0.81[ASN][1000 genomes]
rs2373190	0.82[ASN][1000 genomes]
rs2373191	0.82[ASN][1000 genomes]
rs28463756	0.82[ASN][1000 genomes]
rs28627823	0.81[ASN][1000 genomes]
rs3891003	0.87[JPT][hapmap]
rs4374352	0.86[CHD][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs4459710	0.82[ASN][1000 genomes]
rs4670672	0.82[ASN][1000 genomes]
rs4670673	0.82[ASN][1000 genomes]
rs4670675	0.81[ASN][1000 genomes]
rs58868860	0.82[ASN][1000 genomes]
rs59380055	0.81[ASN][1000 genomes]
rs62134996	0.82[ASN][1000 genomes]
rs62134998	0.82[ASN][1000 genomes]
rs62135000	0.82[ASN][1000 genomes]
rs62135001	0.82[ASN][1000 genomes]
rs62135002	0.82[ASN][1000 genomes]
rs6544060	1.00[ASN][1000 genomes]
rs6544061	0.99[ASN][1000 genomes]
rs6544062	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs6704905	0.87[ASN][1000 genomes]
rs6708343	0.82[ASN][1000 genomes]
rs6718775	0.82[ASN][1000 genomes]
rs6720068	0.81[EUR][1000 genomes]
rs6724820	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6728951	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs6742281	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs6747446	0.83[ASN][1000 genomes]
rs6750763	0.82[ASN][1000 genomes]
rs7565331	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7601827	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876462	0.87[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13022271	CEBPZ	cis	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37408000-37416600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:37408600-37416600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:37409600-37415600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:37409600-37416600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:37410600-37415400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:37413200-37413600	Bivalent/Poised TSS	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links