Variant report

Variant	rs6544062
Chromosome Location	chr2:37414227-37414228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37402555..37406062-chr2:37411468..37414778,3	K562	blood:
2	chr2:37413518..37417531-chr2:37457528..37460316,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000003509	Chromatin interaction
ENSG00000115816	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10168505	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10182091	0.80[ASN][1000 genomes]
rs10182759	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs10205526	0.80[ASN][1000 genomes]
rs10205833	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs10209193	0.80[ASN][1000 genomes]
rs10865122	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs11124565	0.86[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs11569755	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11686193	0.81[ASN][1000 genomes]
rs11885155	0.81[ASN][1000 genomes]
rs11885265	0.80[ASN][1000 genomes]
rs11895771	0.81[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs11895882	0.81[ASN][1000 genomes]
rs12988288	0.99[ASN][1000 genomes]
rs12994806	0.98[ASN][1000 genomes]
rs13008982	0.99[ASN][1000 genomes]
rs13018873	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs13022271	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs13392521	0.80[ASN][1000 genomes]
rs13401374	0.80[ASN][1000 genomes]
rs2373190	0.80[ASN][1000 genomes]
rs2373191	0.80[ASN][1000 genomes]
rs28463756	0.80[ASN][1000 genomes]
rs28627823	0.80[ASN][1000 genomes]
rs3891003	0.80[JPT][hapmap]
rs4374352	0.86[CHD][hapmap];0.80[ASN][1000 genomes]
rs4459710	0.80[ASN][1000 genomes]
rs4670672	0.80[ASN][1000 genomes]
rs4670673	0.80[ASN][1000 genomes]
rs58868860	0.81[ASN][1000 genomes]
rs59380055	0.80[ASN][1000 genomes]
rs62134996	0.81[ASN][1000 genomes]
rs62134998	0.81[ASN][1000 genomes]
rs62135000	0.81[ASN][1000 genomes]
rs62135001	0.81[ASN][1000 genomes]
rs62135002	0.81[ASN][1000 genomes]
rs6544060	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6544061	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6704905	0.86[ASN][1000 genomes]
rs6708343	0.81[ASN][1000 genomes]
rs6718775	0.80[ASN][1000 genomes]
rs6724820	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs6728951	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs6742281	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs6747446	0.82[ASN][1000 genomes]
rs6750763	0.81[ASN][1000 genomes]
rs7565331	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7601827	0.99[ASN][1000 genomes]
rs876462	0.80[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6544062	CEBPZ	cis	lymphoblastoid	seeQTL
rs6544062	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37408000-37416600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:37408600-37416600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:37409600-37415600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:37409600-37416600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:37410600-37415400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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