Variant report

Variant	rs13023905
Chromosome Location	chr2:50126207-50126208
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:50122266..50124004-chr2:50125088..50127859,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1013597	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs10495988	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11125278	0.82[JPT][hapmap]
rs11885824	0.90[JPT][hapmap];0.86[AMR][1000 genomes]
rs11902804	0.86[JPT][hapmap];0.84[AMR][1000 genomes]
rs12476729	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12617277	0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs12618646	0.81[AMR][1000 genomes]
rs12995774	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12998798	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13000689	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13007882	0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs13016321	0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs13022108	0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs13023203	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13025974	0.99[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1345562	0.82[JPT][hapmap];0.81[AMR][1000 genomes]
rs17039412	0.99[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17039430	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17039448	0.81[JPT][hapmap];0.85[AMR][1000 genomes]
rs17039452	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17039454	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17039456	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs17039472	0.86[JPT][hapmap]
rs17039484	0.90[JPT][hapmap];0.82[AMR][1000 genomes]
rs17039508	0.85[JPT][hapmap];0.82[AMR][1000 genomes]
rs17039581	0.84[JPT][hapmap];0.85[AMR][1000 genomes]
rs17039592	0.90[JPT][hapmap];0.84[AMR][1000 genomes]
rs17491776	0.81[JPT][hapmap]
rs2241750	0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs2241752	0.85[JPT][hapmap];0.89[AMR][1000 genomes]
rs34533417	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34918442	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35371642	0.87[AMR][1000 genomes]
rs35373906	0.81[AMR][1000 genomes]
rs4143112	0.90[JPT][hapmap];0.87[AMR][1000 genomes]
rs57936567	0.82[AMR][1000 genomes]
rs62132409	0.84[AMR][1000 genomes]
rs62132414	0.82[AMR][1000 genomes]
rs62132441	0.88[AMR][1000 genomes]
rs62132445	0.85[AMR][1000 genomes]
rs6745765	0.81[JPT][hapmap];0.81[AMR][1000 genomes]
rs6758043	0.90[JPT][hapmap];0.87[AMR][1000 genomes]
rs6758276	0.81[AMR][1000 genomes]
rs7598993	0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs920033	0.90[JPT][hapmap];0.84[AMR][1000 genomes]
rs920034	0.87[AMR][1000 genomes]
rs920035	0.90[JPT][hapmap];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50125400-50126600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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