Variant report

Variant	rs17039412
Chromosome Location	chr2:50130320-50130321
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1013597	0.83[CEU][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10495988	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11125278	0.83[CEU][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11885824	0.83[CEU][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11902804	0.83[CEU][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12476729	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12617277	0.83[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12618646	0.83[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12995774	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12998798	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13000689	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13007882	0.83[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13016321	0.83[CEU][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13022108	0.83[CEU][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13023203	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13023905	0.99[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13025974	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13028383	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1345562	0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17039430	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17039448	0.83[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17039452	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17039454	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17039456	0.83[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17039472	0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs17039484	0.83[CEU][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17039508	0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17039581	0.85[JPT][hapmap];0.87[AMR][1000 genomes]
rs17039592	0.91[JPT][hapmap];0.85[AMR][1000 genomes]
rs17491776	0.82[JPT][hapmap]
rs2241750	0.83[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2241752	0.83[CEU][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34533417	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34918442	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35371642	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35373906	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3922898	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3935314	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4143112	0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57936567	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60884569	0.92[EUR][1000 genomes]
rs62132409	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62132414	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62132439	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62132441	0.89[AMR][1000 genomes]
rs62132445	0.87[AMR][1000 genomes]
rs6745765	0.83[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6753652	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6758043	0.83[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6758276	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7598993	0.83[CEU][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs920033	0.83[CEU][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs920034	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs920035	0.86[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50126600-50131000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:50129200-50130600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links