Variant report

Variant	rs12476729
Chromosome Location	chr2:50090393-50090394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1013597	0.83[CEU][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs10495988	0.94[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11125278	0.83[CEU][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs11885824	0.83[CEU][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rs11902804	0.83[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs12617277	0.83[CEU][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.85[EUR][1000 genomes]
rs12618646	0.83[CEU][hapmap];0.95[MEX][hapmap];0.87[EUR][1000 genomes]
rs12995774	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12998798	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13000689	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13007882	0.83[CEU][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.87[EUR][1000 genomes]
rs13016321	0.83[CEU][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs13022108	0.83[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs13023203	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13023905	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13025974	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13028383	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1345562	0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs17039412	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17039430	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17039448	0.83[CEU][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs17039452	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17039454	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17039456	0.83[CEU][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes]
rs17039472	0.86[JPT][hapmap]
rs17039484	0.83[CEU][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes]
rs17039508	0.86[JPT][hapmap];0.90[MEX][hapmap];0.84[EUR][1000 genomes]
rs17039581	0.84[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap]
rs17039592	0.90[JPT][hapmap]
rs17491776	0.81[JPT][hapmap]
rs2241750	0.83[CEU][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.86[EUR][1000 genomes]
rs2241752	0.83[CEU][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];0.88[EUR][1000 genomes]
rs34533417	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34918442	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35371642	0.88[EUR][1000 genomes]
rs35373906	0.88[EUR][1000 genomes]
rs3922898	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3935314	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4143112	0.90[JPT][hapmap];0.84[MEX][hapmap];0.88[EUR][1000 genomes]
rs57936567	0.87[EUR][1000 genomes]
rs60884569	0.89[EUR][1000 genomes]
rs62132409	0.88[EUR][1000 genomes]
rs62132414	0.88[EUR][1000 genomes]
rs62132439	0.87[EUR][1000 genomes]
rs6745765	0.83[CEU][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.87[EUR][1000 genomes]
rs6753652	0.84[EUR][1000 genomes]
rs6758043	0.82[CEU][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rs6758276	0.87[EUR][1000 genomes]
rs7598993	0.83[CEU][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs920033	0.83[CEU][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rs920034	0.88[EUR][1000 genomes]
rs920035	0.86[CEU][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12476729	KLRAQ1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50088600-50092000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:50089200-50091600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:50090200-50091000	Weak transcription	Brain Germinal Matrix	brain
4	chr2:50090200-50091800	Enhancers	Brain Hippocampus Middle	brain

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