Variant report

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11087472	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs11087473	0.84[CEU][hapmap];1.00[MEX][hapmap]
rs11696125	0.84[CEU][hapmap];1.00[MEX][hapmap]
rs11697115	0.92[MEX][hapmap]
rs11697994	0.83[CEU][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs11699136	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs11699265	0.83[CEU][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs11699457	0.92[MEX][hapmap];0.81[TSI][hapmap]
rs11700002	0.83[CEU][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs13044561	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs34118798	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35435987	0.81[EUR][1000 genomes]
rs35952359	0.86[EUR][1000 genomes]
rs4140547	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs55644719	0.86[EUR][1000 genomes]
rs8126133	0.84[EUR][1000 genomes]
rs8126153	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13041960	XRN2	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24538800-24570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:24562600-24570000	Weak transcription	Spleen	Spleen
3	chr20:24566400-24569200	Enhancers	Fetal Brain Male	brain
4	chr20:24567000-24569400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr20:24567200-24569400	Enhancers	Brain Germinal Matrix	brain
6	chr20:24567400-24569000	Enhancers	Brain Angular Gyrus	brain
7	chr20:24567400-24569000	Enhancers	Brain Hippocampus Middle	brain
8	chr20:24567400-24569000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr20:24567400-24569200	Enhancers	Fetal Brain Female	brain
10	chr20:24567800-24569200	Enhancers	Brain Cingulate Gyrus	brain
11	chr20:24567800-24569200	Enhancers	Fetal Lung	lung
12	chr20:24567800-24569400	Enhancers	Fetal Muscle Leg	muscle
13	chr20:24568000-24569000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr20:24568200-24569200	Enhancers	Fetal Thymus	thymus
15	chr20:24568200-24569400	Enhancers	Brain Anterior Caudate	brain
16	chr20:24568200-24574600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr20:24568200-24577400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr20:24568400-24569000	Enhancers	Placenta Amnion	Placenta Amnion
19	chr20:24568400-24569400	Enhancers	Fetal Muscle Trunk	muscle
20	chr20:24568800-24573800	Weak transcription	Fetal Heart	heart
21	chr20:24568800-24575800	Weak transcription	Brain Substantia Nigra	brain

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