Variant report

Variant	rs55644719
Chromosome Location	chr20:24578688-24578689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11087472	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11697115	0.88[EUR][1000 genomes]
rs11697994	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11699136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11699265	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11699457	0.91[EUR][1000 genomes]
rs11700002	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13041960	0.86[EUR][1000 genomes]
rs13044561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34118798	0.85[EUR][1000 genomes]
rs34414983	0.92[EUR][1000 genomes]
rs35378778	0.90[EUR][1000 genomes]
rs35435987	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35952359	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4140547	0.82[EUR][1000 genomes]
rs8126133	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8126153	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24571400-24584800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:24574600-24580200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr20:24577600-24580000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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