Variant report

Variant	rs34414983
Chromosome Location	chr20:24609936-24609937
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11087472	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11697115	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11697994	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11699136	0.91[EUR][1000 genomes]
rs11699265	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11699457	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11700002	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13044561	0.91[EUR][1000 genomes]
rs35378778	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35435987	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35952359	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4140547	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4815285	0.85[ASN][1000 genomes]
rs55644719	0.92[EUR][1000 genomes]
rs8126133	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8126153	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24584400-24612600	Weak transcription	Aorta	Aorta
2	chr20:24602400-24610000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr20:24607800-24611600	Enhancers	Brain Substantia Nigra	brain
4	chr20:24608200-24610000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr20:24608400-24610600	Enhancers	Spleen	Spleen
6	chr20:24608400-24611000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr20:24608400-24611000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr20:24608400-24611400	Enhancers	Fetal Heart	heart
9	chr20:24608400-24613200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr20:24608600-24611400	Enhancers	Fetal Thymus	thymus
11	chr20:24608600-24615000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr20:24608800-24610400	Enhancers	Fetal Muscle Trunk	muscle
13	chr20:24608800-24610600	Enhancers	Primary T cells from cord blood	blood
14	chr20:24608800-24611000	Enhancers	Primary hematopoietic stem cells	blood
15	chr20:24608800-24611000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr20:24608800-24616800	Enhancers	Brain Hippocampus Middle	brain
17	chr20:24609200-24610400	Enhancers	Brain Anterior Caudate	brain
18	chr20:24609200-24610600	Enhancers	Fetal Stomach	stomach
19	chr20:24609200-24610600	Enhancers	Left Ventricle	heart
20	chr20:24609200-24615200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr20:24609400-24610400	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr20:24609400-24610400	Enhancers	Right Atrium	heart
23	chr20:24609600-24610600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr20:24609600-24610600	Enhancers	Lung	lung
25	chr20:24609600-24610600	Enhancers	Right Ventricle	heart
26	chr20:24609600-24610800	Enhancers	Brain Angular Gyrus	brain
27	chr20:24609600-24612200	Enhancers	Brain Cingulate Gyrus	brain
28	chr20:24609800-24610400	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr20:24609800-24610400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr20:24609800-24610600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
31	chr20:24609800-24610600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr20:24609800-24610600	Enhancers	Fetal Muscle Leg	muscle
33	chr20:24609800-24610800	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr20:24609800-24610800	Enhancers	Thymus	Thymus

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