Variant report

Variant	rs34118798
Chromosome Location	chr20:24570053-24570054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11087472	0.84[EUR][1000 genomes]
rs11697994	0.84[EUR][1000 genomes]
rs11699136	0.85[EUR][1000 genomes]
rs11699265	0.85[EUR][1000 genomes]
rs11700002	0.85[EUR][1000 genomes]
rs13041960	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13044561	0.85[EUR][1000 genomes]
rs35952359	0.85[EUR][1000 genomes]
rs4140547	0.84[EUR][1000 genomes]
rs55644719	0.85[EUR][1000 genomes]
rs8126133	0.82[EUR][1000 genomes]
rs8126153	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24538800-24570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:24568200-24574600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24568200-24577400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr20:24568800-24573800	Weak transcription	Fetal Heart	heart
5	chr20:24568800-24575800	Weak transcription	Brain Substantia Nigra	brain
6	chr20:24569200-24570200	Weak transcription	Fetal Brain Female	brain
7	chr20:24569200-24573800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr20:24569400-24570400	Weak transcription	Brain Germinal Matrix	brain
9	chr20:24570000-24570200	Enhancers	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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