Variant report

Variant	rs13061508
Chromosome Location	chr3:68794713-68794714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10510971	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13071029	1.00[EUR][1000 genomes]
rs13071343	1.00[CEU][hapmap]
rs13083495	1.00[EUR][1000 genomes]
rs13084589	1.00[EUR][1000 genomes]
rs13087288	1.00[EUR][1000 genomes]
rs13099159	1.00[EUR][1000 genomes]
rs34224188	1.00[EUR][1000 genomes]
rs4270511	1.00[CEU][hapmap]
rs6770575	1.00[CEU][hapmap]
rs6810150	1.00[CEU][hapmap]
rs71302156	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834722	chr3:68775036-68974120	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68789400-68801200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:68790600-68795400	Enhancers	Primary hematopoietic stem cells	blood
3	chr3:68791200-68794800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:68794600-68794800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:68794600-68795200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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