Variant report

Variant	rs34224188
Chromosome Location	chr3:68678429-68678430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10510971	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13061508	1.00[EUR][1000 genomes]
rs13071029	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13083495	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13084589	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13087288	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13099159	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1511888	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17047847	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34541684	0.85[ASN][1000 genomes]
rs34661976	0.81[AMR][1000 genomes]
rs4855492	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59512855	0.81[AMR][1000 genomes]
rs67984146	0.81[AMR][1000 genomes]
rs71312515	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3324561	chr3:68677687-68680235	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
2	esv3410667	chr3:68677937-68680260	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68676600-68679800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:68677600-68680400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:68678000-68680800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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