Variant report
| Variant | rs1511888 |
|---|---|
| Chromosome Location | chr3:68610451-68610452 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10510971 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs13071029 | 1.00[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13071343 | 1.00[CEU][hapmap];0.83[JPT][hapmap] |
| rs13083495 | 1.00[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13084589 | 1.00[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs13087288 | 0.86[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs13099159 | 1.00[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17047847 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34224188 | 1.00[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs34541684 | 0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs34661976 | 0.81[AMR][1000 genomes] |
| rs4270511 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs4855492 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs59512855 | 0.81[AMR][1000 genomes] |
| rs6770575 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap] |
| rs67984146 | 0.81[AMR][1000 genomes] |
| rs6810150 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.88[YRI][hapmap] |
| rs71312511 | 0.83[ASN][1000 genomes] |
| rs71312515 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9825378 | 0.82[CHB][hapmap];0.85[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1832396 | chr3:68478762-68641509 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | esv1828578 | chr3:68595321-68641509 | Enhancers Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv508223 | chr3:68603630-68645355 | Enhancers ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv3862 | chr3:68608012-68653563 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:68610000-68612000 | Enhancers | Fetal Lung | lung |
